PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023904390.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 779aa    MW: 87969.9 Da    PI: 5.6076
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023904390.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS348.61e-1064027761373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL+ cA+avs+gd + a+++L++++++++p gd  qRla +f+++L+arla++  ++    +p  + +++ +e l+a+++   ++P+ +++ 
  XP_023904390.1 402 LRNLLILCAQAVSAGDGRTANEVLKQVRDHSTPFGDGSQRLAYFFANGLEARLAGTKVGTQIFYTPLFSMRMSAAELLKAYRVHLSACPFKRITL 496
                     6899***************************************************6666655556777777889********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     +   + Il+a+e+++++H++Df+i +G+QWp L+q L++Rpegpp+lRiTgv+ p++g   +e++eetg+rL+k++++++vpfe+n+++++++e+
  XP_023904390.1 497 FFGMKCILRAAEKATTLHVVDFGIHYGFQWPILIQFLSKRPEGPPKLRITGVDLPQPGfrPTESIEETGRRLEKYCKRFNVPFEYNAIASQNWET 591
                     *********************************************************9*9****************************999**** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++eeL+++++E+laV +++++++llde+ +  s+rd++L+l+++++P+++v +  + + ns+ F +rf eal +ysal+d+++++++r++ er 
  XP_023904390.1 592 IRIEELKIERNEVLAVTCAFRMKNLLDETIEGISPRDAFLNLIRRMKPDIFVNSIVNGSFNSPFFHTRFREALFHYSALYDMFDVTISRNNPERL 686
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     + Ere+ gre++nv+aceg er+er et+++ + r+++aGFk++pl+++ ++  ++ ++  + + + ++e++++l++gWk+r +++ S+W
  XP_023904390.1 687 MFEREFYGREVMNVIACEGLERVERPETYKQCQVRISRAGFKSLPLNQEQMNMFRARMKAWYHKDFILDEDNHWLLQGWKGRIVYASSSW 776
                     **************************************************************888************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 779 aa     Download sequence    
MIMDSSSNFL DGVTTMSPNS EDNFSNLINE YTFNQLSAPT TDLNFLGSPN LSSDSDLGPT  60
GFEPSITTTV GPEGQPYDAP HVVFPPMLQA DSTSSSYDSD FSETVLKYIN QILMEENIEN  120
KPCMFYDPLG LKDTEKSFYD ALGQNYPPLP NQNSVESPVF SSSSCDYGTT STSSSSPVND  180
SQALSDHGEH NYQPSSSPPP FPGDYNAVQS NFKPTDHKSQ FFGNLPNGSV NYLGDGLEFM  240
AQNIFTDSKS ILQFRRGLEE ASKFLPKSNN LVIDLESNVV SSTKRKGEDL KVESLVVKSE  300
KESYSRDGSR GRKNHAREEI ELEEGRSNKQ TAVYVEKSEE TELSEMFDKV LLCTDAPAAM  360
YGDNCEHLQN DASKASLETQ GGNGGKGSRN KKQVRKKETV DLRNLLILCA QAVSAGDGRT  420
ANEVLKQVRD HSTPFGDGSQ RLAYFFANGL EARLAGTKVG TQIFYTPLFS MRMSAAELLK  480
AYRVHLSACP FKRITLFFGM KCILRAAEKA TTLHVVDFGI HYGFQWPILI QFLSKRPEGP  540
PKLRITGVDL PQPGFRPTES IEETGRRLEK YCKRFNVPFE YNAIASQNWE TIRIEELKIE  600
RNEVLAVTCA FRMKNLLDET IEGISPRDAF LNLIRRMKPD IFVNSIVNGS FNSPFFHTRF  660
REALFHYSAL YDMFDVTISR NNPERLMFER EFYGREVMNV IACEGLERVE RPETYKQCQV  720
RISRAGFKSL PLNQEQMNMF RARMKAWYHK DFILDEDNHW LLQGWKGRIV YASSSWVPV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein