PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023904594.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

LBD

Protein Properties

Length: 283aa MW: 31548.4 Da PI: 7.5664

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023904594.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.6	1.9e-42	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk++rrkC++dCv+apyfpa+qp+kfanvh +FGasnv k+l++l++ +reda++sl+yeAear++dPvyG+vg+i+ lq +l+q + l XP_023904594.1 7 PCAACKLQRRKCTQDCVFAPYFPADQPQKFANVHNVFGASNVAKILNELNPVQREDAVNSLAYEAEARLSDPVYGCVGIISILQYKLKQIQISLY 101 7******************************************************************************************9999 PP DUF260 96 llkee 100 +k+e XP_023904594.1 102 NAKQE 106 88886 PP

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence
MSSSNSPCAA CKLQRRKCTQ DCVFAPYFPA DQPQKFANVH NVFGASNVAK ILNELNPVQR 60 EDAVNSLAYE AEARLSDPVY GCVGIISILQ YKLKQIQISL YNAKQELARF SSGQAIHPTL 120 YSPGFIPKLQ HLDNPSSSSS VLPYIPTGAD THGGQLAIRE TQRQLHQQQQ QQQHMLQMQQ 180 QIFEEQKMVA AVAAREQQER EFVRFNTGFD PPANLGSINP NVYNQRNDAA AGMSPLALGT 240 FENPYLIQTQ VAEPQHHLQP QPPQQGQQSQ PQQPKLESKE GRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	4e-60	LBD family protein