PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023904695.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

ARF

Protein Properties

Length: 673aa MW: 75011 Da PI: 6.3191

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023904695.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	70.8	1.8e-22	127	227	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+lt sd++++g +++ +++a+++ +++ ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F + + XP_023904695.1 127 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL--RGE 217 99**************************964333..4459********************************************..449 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ++el+v+v+r XP_023904695.1 218 NGELRVGVRR 227 999***97 PP
2	Auxin_resp	113.5	1.9e-37	253	335	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++tk+ F+v+Y+Pr+s+seF+v+v+k+++a ++k+svGmRf+m+fe+e+++err+sGt+vgv+d +++ W++S+WrsLk XP_023904695.1 253 ASHAIATKTLFSVFYKPRTSRSEFIVSVNKYLEARSHKLSVGMRFRMRFEGEEVPERRFSGTIVGVEDNKSSGWTDSEWRSLK 335 789******************************************************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 673 aa Download sequence
MAFSASNHSS NASRAGVPND ALYKELWHAC AGPLVNLPRE GERVYYFPQG HMEQLEASMH 60 QGSEQQMPSF NLPSKILCKV VNVHLRAEAE TDEVYAQITL LPDSDQSEVT SPDPPISDPP 120 RCTVHSFCKT LTASDTSTHG GFSVLRRHAD DCLPPLDMSQ QPPWQELVAT DLHGNEWHFR 180 HIFRGQPRRH LLTTGWSVFV SSKKLVAGDA FIFLRGENGE LRVGVRRLMR QLSNMPSSVI 240 SSHSMHLGVL ATASHAIATK TLFSVFYKPR TSRSEFIVSV NKYLEARSHK LSVGMRFRMR 300 FEGEEVPERR FSGTIVGVED NKSSGWTDSE WRSLKVQWDE HSSIVRPDRV SPWELEPLVA 360 NSPPSSQPTP RNKRARPAVL PSQTPDFPVL GAWKSPVEPS AFSYCEPQRG RDFYPSPKFS 420 SAAKGNSFSF SGNNSLAAVS SNSAYWSNRG EAVTESFSPV VSKESGEKRQ GTGNGCRLFG 480 IQLLDNSNVE ETSQVVMSRA VGDEQPVPYL EADSDQHSEP NRSDVPSVSC DAEKSCLRSP 540 QESQSRQIRS CTKVHMQGIA VGRAVDLTRF DQYEDLLRKL EEMFDIEGEL CGSTKKWQVV 600 YTDDEDDVML VGDDPWHEFC SIVRKIFIYT TEEVRRLSPK IKLPVPSEAK SGMPDSEVAV 660 IIEDHSSVVG SGC

Sequence ? help Back to Top

Protein Sequence Length: 673 aa Download sequence

MAFSASNHSS NASRAGVPND ALYKELWHAC AGPLVNLPRE GERVYYFPQG HMEQLEASMH  60
QGSEQQMPSF NLPSKILCKV VNVHLRAEAE TDEVYAQITL LPDSDQSEVT SPDPPISDPP  120
RCTVHSFCKT LTASDTSTHG GFSVLRRHAD DCLPPLDMSQ QPPWQELVAT DLHGNEWHFR  180
HIFRGQPRRH LLTTGWSVFV SSKKLVAGDA FIFLRGENGE LRVGVRRLMR QLSNMPSSVI  240
SSHSMHLGVL ATASHAIATK TLFSVFYKPR TSRSEFIVSV NKYLEARSHK LSVGMRFRMR  300
FEGEEVPERR FSGTIVGVED NKSSGWTDSE WRSLKVQWDE HSSIVRPDRV SPWELEPLVA  360
NSPPSSQPTP RNKRARPAVL PSQTPDFPVL GAWKSPVEPS AFSYCEPQRG RDFYPSPKFS  420
SAAKGNSFSF SGNNSLAAVS SNSAYWSNRG EAVTESFSPV VSKESGEKRQ GTGNGCRLFG  480
IQLLDNSNVE ETSQVVMSRA VGDEQPVPYL EADSDQHSEP NRSDVPSVSC DAEKSCLRSP  540
QESQSRQIRS CTKVHMQGIA VGRAVDLTRF DQYEDLLRKL EEMFDIEGEL CGSTKKWQVV  600
YTDDEDDVML VGDDPWHEFC SIVRKIFIYT TEEVRRLSPK IKLPVPSEAK SGMPDSEVAV  660
IIEDHSSVVG SGC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59750.1	0.0	ARF family protein