PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023905589.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 464aa    MW: 53166.5 Da    PI: 7.2863
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023905589.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS298.91.3e-91834611373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl  A+a+++++   a + L++l +++s +g++mqR++ayf+ +Laarl+   s  y+ +  ++t+    +ee++a++ ++ vsP+++f+h
  XP_023905589.1  83 LIHLLLVTATAIDQNKVGSALENLSELYQNVSLNGESMQRVVAYFADGLAARLLTRKSPFYDMIMKEPTN----EEEFFAFTHLYRVSPYYQFAH 173
                     689****************************************************9*****999888887....78889999************* PP

            GRAS  96 ltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlv 182
                     +taNq I ea+e+e     +++H+iDfdis+G+QWp+L+q+L++++  ++  slR+Tg+g+    s eel+et++rL +f + + +++fef+ l 
  XP_023905589.1 174 FTANQSIIEAFEREeainnRTLHVIDFDISYGFQWPSLIQSLSEKAssGNRISLRVTGFGR----SLEELQETENRLVSFSKGFhNLTFEFQGL- 263
                     *************955554555**********************99745556*********....9****************9758*******8. PP

            GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                        l   +l  L+ k++E+l+Vnlv+ l +l+ + +++++    +Lk + sl+P +v++veqe +++s sFl rf+e+l+y++a+fdsl+  lp 
  XP_023905589.1 264 ---LRGSKLIYLKKKKDETLVVNLVFYLDTLH-NYLEVSD----TLKSIHSLKPSIVILVEQEGSRSSRSFLSRFMESLHYFAAMFDSLDDCLPL 350
                     ...56666679999************999997.5555555....*************************************************** PP

            GRAS 278 eseerikvErellgreivnvvacegae..rrerhetlekWrerleeaGFkpvplsekaakqaklllr......kvksdg.....yrveee.sgsl 358
                     es er  +E+  lg++i++++   + +     +he++e+W++r+++  F++ +ls+k + qaklll+       +++dg     +rv e+ +g +
  XP_023905589.1 351 ESAERLGIEKNHLGKDIKSLLNDDNISgmNCPKHEKKETWKARMGSHAFRAGKLSSKSMIQAKLLLKirthycPHQFDGessggFRVFERdDGRA 445
                     *********************998876446789********************************973322221223333333477754437777 PP

            GRAS 359 v.lgWkdrpLvsvSaW 373
                     v lgW+dr L+++S W
  XP_023905589.1 446 VsLGWQDRCLLTASLW 461
                     78************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    
MEDTYEKEDL LNLSLAIVTN SGSDERTSKR KRRDTLSPMQ QHSYEGCEGK IYRLLQMREQ  60
MLKLESHKVR KAVVVEDGNG LHLIHLLLVT ATAIDQNKVG SALENLSELY QNVSLNGESM  120
QRVVAYFADG LAARLLTRKS PFYDMIMKEP TNEEEFFAFT HLYRVSPYYQ FAHFTANQSI  180
IEAFEREEAI NNRTLHVIDF DISYGFQWPS LIQSLSEKAS SGNRISLRVT GFGRSLEELQ  240
ETENRLVSFS KGFHNLTFEF QGLLRGSKLI YLKKKKDETL VVNLVFYLDT LHNYLEVSDT  300
LKSIHSLKPS IVILVEQEGS RSSRSFLSRF MESLHYFAAM FDSLDDCLPL ESAERLGIEK  360
NHLGKDIKSL LNDDNISGMN CPKHEKKETW KARMGSHAFR AGKLSSKSMI QAKLLLKIRT  420
HYCPHQFDGE SSGGFRVFER DDGRAVSLGW QDRCLLTASL WHCV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-50GRAS family protein