PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023905630.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MYB
Protein Properties Length: 293aa    MW: 32998.9 Da    PI: 5.2654
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023905630.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72.1e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed++l+d vk +G g W+  a++ g++R++k+c++rw +yl
   XP_023905630.1 14 KGAWTALEDKILIDHVKTHGEGKWSNLAKETGLKRCGKSCRLRWMNYL 61
                     79********************************************97 PP
2Myb_DNA-binding537.6e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ +++E+el+ +++k+lG++ W++Ia +++ gRt++++k++w++yl
   XP_023905630.1  67 RGNISQDEEELIMRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSYL 112
                      7899******************.*********.*************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    
MGRNPRCTKD GLNKGAWTAL EDKILIDHVK THGEGKWSNL AKETGLKRCG KSCRLRWMNY  60
LRPDIKRGNI SQDEEELIMR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNS YLAKKTQDQI  120
PSPKSRTDQK KPTIRVHHES DALLEGKGVL VSAQHHVDDD QIHETKVPIF LTPTVETNMV  180
KIKSSISESS AGSPSTSKEE NMSDFILDLS SDDFCKMLDS DFAKLSDVDI NELHNIAIEG  240
DKDSLLVLSE ETENNGRESG QLNNSNMVSD FQSLFLDSDD GWLGDDLNIA FSD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.14e-58MYB family protein