PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023905762.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family M-type_MADS
Protein Properties Length: 211aa    MW: 24234.9 Da    PI: 10.3801
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023905762.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.98.4e-161150342
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    i n+s r+ tf kR++g+lKK +ELS+ C+++ + ii+s+
  XP_023905762.1 11 ITNDSARKATFKKRKKGLLKKVSELSTICGIKSCAIIYSP 50
                    89*************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
MTRKKVKLAY ITNDSARKAT FKKRKKGLLK KVSELSTICG IKSCAIIYSP YDSQPEVWAS  60
EHGIQHVLGL FKNMPEMEQT KKMVNQESFL RQRIPKANEQ LRKQQKDNRE KEMTEVMFQS  120
LTGKSLHNLT MMDLNDLGWL IDQNLKNIYR RIGQLNKVAQ KGEPAAAKTE GMVVGSTNTS  180
TTPSEMNNVQ QPHDHHQRTP GFEMNLDTMQ R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLAYITNDSARKATFKKRK
22226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-61M-type_MADS family protein