PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023905908.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

HD-ZIP

Protein Properties

Length: 201aa MW: 23725.6 Da PI: 6.5592

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023905908.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.9	1.9e-19	47	101	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++++eq++ Le +F +++++ +++ +LA++lgL+ rqV vWFqNrRa++k+ XP_023905908.1 47 KKRKLSNEQVNLLEYYFCNEHKLESQRKDRLASELGLEPRQVAVWFQNRRARWKN 101 45689************************************************95 PP
2	HD-ZIP_I/II	115	4.6e-37	47	138	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkr+ls+eqv+lLE F +e+kLe++rK +la+eLgl+prqvavWFqnrRAR+k+++lE++y+ Lkr+++++ e+++Le+ev +L+e+l+e XP_023905908.1 47 KKRKLSNEQVNLLEYYFCNEHKLESQRKDRLASELGLEPRQVAVWFQNRRARWKNQKLEEQYSGLKREHETVLIEKCQLESEVLKLKEQLSE 138 9****************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence
MNRQDQMVQF SQLYPDAYTQ IVTQQGESKP RRRRKKNKGG EASELAKKRK LSNEQVNLLE 60 YYFCNEHKLE SQRKDRLASE LGLEPRQVAV WFQNRRARWK NQKLEEQYSG LKREHETVLI 120 EKCQLESEVL KLKEQLSEAE KEIQRLSQNV ETVPTNSTSS SPSVETMAEP FLGEFEMEGY 180 NEAFYTSAFS YGTMDWFNQY I

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	31	50	RRRRKKNKGGEASELAKKRK
2	32	51	RRRRKKNKGGEASELAKKRK
3	33	52	RRRRKKNKGGEASELAKKRK
4	34	53	RRRRKKNKGGEASELAKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	2e-57	HD-ZIP family protein