PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023905937.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MIKC_MADS

Protein Properties

Length: 200aa MW: 22978.8 Da PI: 7.436

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023905937.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	79.2	2.9e-25	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien rqvtf+kRr+g+lKKA+ELSvLCdae+ + ifs +gklye + XP_023905937.1 9 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELA 58 79*********************************************965 PP
2	K-box	64.5	3.9e-22	89	173	16	100
K-box 16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++e++ Lk+e+e Lq+ +R + G ++++++l eL Le++Le + +iRs+K+++++e+i+ l++ke l+ +nk+L+ k+ee XP_023905937.1 89 DAKEEIKLLKQEVEILQKGLRYMFGGGVGTMTLDELDVLEKHLEIWICNIRSTKMNIMYEEIQLLRNKEGILKAANKYLQDKIEE 173 6789******************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence
MARGKVQLKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGLFIFSA HGKLYELATK 60 GTMQGLIERY MESNRGAQPE PDIETQPLDA KEEIKLLKQE VEILQKGLRY MFGGGVGTMT 120 LDELDVLEKH LEIWICNIRS TKMNIMYEEI QLLRNKEGIL KAANKYLQDK IEENTGMIDF 180 TPNTTNFAYP LTIQNEIFQL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71692.1	9e-84	MIKC_MADS family protein