PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023906196.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family LBD
Protein Properties Length: 244aa    MW: 24980.3 Da    PI: 8.0829
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023906196.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.71.2e-40311311100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++C++apyf +eq + +fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ael
  XP_023906196.1  31 PCGACKFLRRKCVPGCIFAPYFDSEQgAGHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAEL 125
                     7***********************9988******************************************************************* PP

          DUF260  95 allkee 100
                     ++l+++
  XP_023906196.1 126 SYLQAH 131
                     *99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MSVNPTSSGG SGGGGGGSSG SGGGGGGGGG PCGACKFLRR KCVPGCIFAP YFDSEQGAGH  60
FAAVHKVFGA SNVSKLLLHI PVHKRLDAVV TICYEAQARL RDPVYGCVAH IFALQQQVVN  120
LQAELSYLQA HLATLELPSP LPSHPSPPPT MMTPPPLSIA DLPSASSVPA TYDLSSLFDP  180
MVQPSWPMQQ RPMDPRQLGG SGSSSSAGGG DLQALARELL HRHGTPSPGS VPCSSPSPSQ  240
SFSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.14e-79LBD family protein