PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023906612.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

HRT-like

Protein Properties

Length: 620aa MW: 68518.3 Da PI: 9.4993

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023906612.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	57	3.3e-18	275	304	2	31
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CGv l+dGsvC r+P + RKRC+eHKGmRi XP_023906612.1 275 CGVSLGDGSVCWRPPLERRKRCAEHKGMRI 304 *****************************7 PP
2	HRT-like	58.5	1.1e-18	364	394	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv l++Gs+C+rqP+kgRKRC HKGmRi XP_023906612.1 364 ICGVPLNNGSPCSRQPAKGRKRCDDHKGMRI 394 8*****************************7 PP
3	HRT-like	40.4	5e-13	457	483	1	27
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHK 27 iC v l+ G C+rqP++gR RCeeHK XP_023906612.1 457 ICEVDLGSGAYCTRQPARGRVRCEEHK 483 8************************** PP
4	HRT-like	33.3	8.3e-11	522	551	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 +CG++ +dGs C+r+ v+g+KRC++H G R XP_023906612.1 522 TCGATCRDGSLCRRKLVEGNKRCWQHGGIR 551 7*************************9977 PP
5	HRT-like	52.6	7.7e-17	584	613	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 +CG++ dGs C+rqPv+g+KRC++HKGmR XP_023906612.1 584 TCGATCHDGSLCRRQPVEGNKRCWQHKGMR 613 7****************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 620 aa Download sequence
MVATASSDSL TTRLKREDCN RTKHDSVFSN WKVLVGPSDW EDYSLGKEGA ARYRVHNLPK 60 SSGSGIYELG IAVSQTGLGR EVGKLDPDRL VVVYLGQADN VRTRLQQYGR TGAHLGNSYA 120 NGCANDSKNV SLQKRLGLFD ETLSRGYPIV FRWAPMESKR DAEKTEAQLL NRFDYAWNTS 180 FNGARRPDDI VQKLNKIASG TTRYSNIVRK LLPFSQKQVG IRIKASKLPS PENKLNTYAD 240 EESYNFLPRV FKFGRSQPRL VLDRIGVIED NTSFCGVSLG DGSVCWRPPL ERRKRCAEHK 300 GMRIHMSILK VVTEGKPTSI VGSDFSTVAD RKSGSDSAQN FSDGTTELQP VPVKCPVSES 360 VTPICGVPLN NGSPCSRQPA KGRKRCDDHK GMRICRFISE SVTEGKSQYD HDVDLDSSCH 420 DALSYNQNSS AMCKPGIVLQ PRVSSEKLVV SKGYGTICEV DLGSGAYCTR QPARGRVRCE 480 EHKWLKINGL VLKLEAEDKS HVSGLGSKLS TSNDYKYGNS TTCGATCRDG SLCRRKLVEG 540 NKRCWQHGGI RAGGSFSGFD SGINSLTCSK LSSYNDYKYG NSTTCGATCH DGSLCRRQPV 600 EGNKRCWQHK GMRAGRSFYF

Sequence ? help Back to Top

Protein Sequence Length: 620 aa Download sequence

MVATASSDSL TTRLKREDCN RTKHDSVFSN WKVLVGPSDW EDYSLGKEGA ARYRVHNLPK  60
SSGSGIYELG IAVSQTGLGR EVGKLDPDRL VVVYLGQADN VRTRLQQYGR TGAHLGNSYA  120
NGCANDSKNV SLQKRLGLFD ETLSRGYPIV FRWAPMESKR DAEKTEAQLL NRFDYAWNTS  180
FNGARRPDDI VQKLNKIASG TTRYSNIVRK LLPFSQKQVG IRIKASKLPS PENKLNTYAD  240
EESYNFLPRV FKFGRSQPRL VLDRIGVIED NTSFCGVSLG DGSVCWRPPL ERRKRCAEHK  300
GMRIHMSILK VVTEGKPTSI VGSDFSTVAD RKSGSDSAQN FSDGTTELQP VPVKCPVSES  360
VTPICGVPLN NGSPCSRQPA KGRKRCDDHK GMRICRFISE SVTEGKSQYD HDVDLDSSCH  420
DALSYNQNSS AMCKPGIVLQ PRVSSEKLVV SKGYGTICEV DLGSGAYCTR QPARGRVRCE  480
EHKWLKINGL VLKLEAEDKS HVSGLGSKLS TSNDYKYGNS TTCGATCRDG SLCRRKLVEG  540
NKRCWQHGGI RAGGSFSGFD SGINSLTCSK LSSYNDYKYG NSTTCGATCH DGSLCRRQPV  600
EGNKRCWQHK GMRAGRSFYF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	1e-103	HRT-like family protein