PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023907205.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MIKC_MADS

Protein Properties

Length: 233aa MW: 26958.8 Da PI: 9.3147

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023907205.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	82.3	3.2e-26	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n+s rqvtfskRr+g++KKA+EL +LCdaev ++ifsst klye++s XP_023907205.1 10 RIDNSSSRQVTFSKRRKGLIKKAKELAILCDAEVGLVIFSSTAKLYEFAS 59 9***********************************************86 PP
2	K-box	80.5	4.1e-27	77	171	5	99
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++ ++ +++ + +q+e+a Lk+++e L++++R l+Ge+L L +k+Lq+Le++Le sl+ iR kK+++l+++i+el ++ + +++en +L kk++ XP_023907205.1 77 QQPQNPASEVKFWQREAAILKQQLEDLRENHRYLMGEQLYGLGVKDLQNLENRLEMSLQGIRMKKEQILTDEIQELSRRGNLIHQENVELYKKVN 171 5556778999*********************************************************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence
MGRGKIAIQR IDNSSSRQVT FSKRRKGLIK KAKELAILCD AEVGLVIFSS TAKLYEFAST 60 NMNAVLGRYN KSKGEYQQPQ NPASEVKFWQ REAAILKQQL EDLRENHRYL MGEQLYGLGV 120 KDLQNLENRL EMSLQGIRMK KEQILTDEIQ ELSRRGNLIH QENVELYKKV NNIREENLEL 180 CKKVRCTRHV NAESISPFIP FGTNFGEDLH VPIHLQLSQP DRQLYETPAR ETD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	1e-100	MIKC_MADS family protein