PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023907208.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MIKC_MADS

Protein Properties

Length: 219aa MW: 25274.9 Da PI: 9.5225

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023907208.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	82.4	2.9e-26	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n+s rqvtfskRr+g++KKA+EL +LCdaev ++ifsst klye++s XP_023907208.1 10 RIDNSSSRQVTFSKRRKGLIKKAKELAILCDAEVGLVIFSSTAKLYEFAS 59 9***********************************************86 PP
2	K-box	83	6.4e-28	77	170	5	98
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ ++ +++ + +q+e+a Lk+++e L++++R l+Ge+L L +k+Lq+Le++Le sl+ iR kK+++l+++i+el ++ + +++en +L kk+ XP_023907208.1 77 QQPQNPASEVKFWQREAAILKQQLEDLRENHRYLMGEQLYGLGVKDLQNLENRLEMSLQGIRMKKEQILTDEIQELSRRGNLIHQENVELYKKV 170 5556778999********************************************************************************9997 PP

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence
MGRGKIAIQR IDNSSSRQVT FSKRRKGLIK KAKELAILCD AEVGLVIFSS TAKLYEFAST 60 NMNAVLGRYN KSKGEYQQPQ NPASEVKFWQ REAAILKQQL EDLRENHRYL MGEQLYGLGV 120 KDLQNLENRL EMSLQGIRMK KEQILTDEIQ ELSRRGNLIH QENVELYKKV RCTRHVNAES 180 ISPFIPFGTN FGEDLHVPIH LQLSQPDRQL YETPARETD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37940.1	2e-96	MIKC_MADS family protein