PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023907398.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

AP2

Protein Properties

Length: 547aa MW: 60544.3 Da PI: 6.6621

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023907398.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47	6.3e-15	162	221	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_023907398.1 162 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 221 57*****************666664477446***********************98 PP
2	AP2	47.1	6e-15	266	315	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g XP_023907398.1 266 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 315 9*************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence
MNSNNWLSFP LSPTHSSLPA HLQTSQSHHF SLGLVNDTMD NPFQSQEWNM IDTHGSSEVP 60 KVADFLGVSK SENQSDLVSF KEIQTNDSDY LFQSSSLVPV QNTVVATTSN YEFQENANSL 120 QSLTLSMGSG KGSTCETSGD NSTNTVETTP RRTLDTFGQR TSIYRGVTRH RWTGRYEAHL 180 WDNSCRREGQ SRKGRQVYLG GYDKEEKAAR AYDLAALKYW GTSTTTNFQI SNYEKELEEM 240 KHMTRQEFVA SIRRKSSGFS RGASMYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTEE 300 EAAEAYDIAA IKFRGLNAVT NFDMNRYDVK SILESNTLPI GGGAAKRLKE AQAIESSRKR 360 EEMIALGSSF QYGSSSSSRL QPYPLLQHQP FDQPQPLLTL QNHDISPYTA QDPSFHQSYI 420 QTQLQLHQQS AGSYLHQSSQ NNSSQFYNNY LQNHPALLQG LMNMGSSSSS VIENNGNSSG 480 SYSGGGYLGN GLNAMATNSP SGNAVGSAAD ELALVKVDYD MPSAGYGSWS GDSVQGSNPS 540 VFTMWND

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence

MNSNNWLSFP LSPTHSSLPA HLQTSQSHHF SLGLVNDTMD NPFQSQEWNM IDTHGSSEVP  60
KVADFLGVSK SENQSDLVSF KEIQTNDSDY LFQSSSLVPV QNTVVATTSN YEFQENANSL  120
QSLTLSMGSG KGSTCETSGD NSTNTVETTP RRTLDTFGQR TSIYRGVTRH RWTGRYEAHL  180
WDNSCRREGQ SRKGRQVYLG GYDKEEKAAR AYDLAALKYW GTSTTTNFQI SNYEKELEEM  240
KHMTRQEFVA SIRRKSSGFS RGASMYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFSTEE  300
EAAEAYDIAA IKFRGLNAVT NFDMNRYDVK SILESNTLPI GGGAAKRLKE AQAIESSRKR  360
EEMIALGSSF QYGSSSSSRL QPYPLLQHQP FDQPQPLLTL QNHDISPYTA QDPSFHQSYI  420
QTQLQLHQQS AGSYLHQSSQ NNSSQFYNNY LQNHPALLQG LMNMGSSSSS VIENNGNSSG  480
SYSGGGYLGN GLNAMATNSP SGNAVGSAAD ELALVKVDYD MPSAGYGSWS GDSVQGSNPS  540
VFTMWND

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51190.1	0.0	AP2 family protein