PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023907713.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 368aa MW: 40045.6 Da PI: 6.9243

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023907713.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	25.4	3.6e-08	299	321	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k+F+r+s+L++Hi +H XP_023907713.1 299 HKCKICDKRFTRPSSLQTHIYSH 321 79******************998 PP
2	zf-C2H2	18.8	4.4e-06	327	351	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + C+ Cg++Fs snL+rH ++H XP_023907713.1 327 FACEvdGCGRHFSVVSNLRRHRKVH 351 789999*****************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MALAVDNRHQ QQQFSSANYD NMRYPQPQFT NPWVSAPPTG HNHMYATATS ASDPSRYAAH 60 APNVSAAYSS NTLAAPSMAS GILPLDPELF DQTNLQFAQD MSASRPYGSA YNPPSATSST 120 ASSYTPTSAP QFSASYGYQA DRRPSHPSVA FSYLDDQAEI PHIDMTDRFN TTSEAERQGY 180 NDALDASRGM VQMSQTDITP RNIYGSNTVR NPTDSYGFPT AHSSHSSISS ASTYPTYYNS 240 SVSEASVGDY SSANESVDMP NSRTLPRPSA LIAGSIPPAP QSMMGQFSSK VSSSSQKKHK 300 CKICDKRFTR PSSLQTHIYS HTGEKPFACE VDGCGRHFSV VSNLRRHRKV HKGDGKDHGS 360 PDDSNDEM

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MALAVDNRHQ QQQFSSANYD NMRYPQPQFT NPWVSAPPTG HNHMYATATS ASDPSRYAAH  60
APNVSAAYSS NTLAAPSMAS GILPLDPELF DQTNLQFAQD MSASRPYGSA YNPPSATSST  120
ASSYTPTSAP QFSASYGYQA DRRPSHPSVA FSYLDDQAEI PHIDMTDRFN TTSEAERQGY  180
NDALDASRGM VQMSQTDITP RNIYGSNTVR NPTDSYGFPT AHSSHSSISS ASTYPTYYNS  240
SVSEASVGDY SSANESVDMP NSRTLPRPSA LIAGSIPPAP QSMMGQFSSK VSSSSQKKHK  300
CKICDKRFTR PSSLQTHIYS HTGEKPFACE VDGCGRHFSV VSNLRRHRKV HKGDGKDHGS  360
PDDSNDEM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.2	2e-08	C2H2 family protein