PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023908186.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family ARR-B
Protein Properties Length: 703aa    MW: 76475.3 Da    PI: 5.5289
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023908186.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like911.1e-28213266155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++W+ eLH++Fv av+qL G ekA+Pk+il+lm+v+gLt+e+v+SHLQkYRl
  XP_023908186.1 213 KPRVVWSVELHRKFVAAVNQL-GLEKAVPKKILDLMDVEGLTRENVASHLQKYRL 266
                     79*******************.********************************8 PP
2Myb_DNA-binding39.11.7e-12215265148
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                      r  W+ e++ ++v av+qlG +   +k+I   m  +g+t++++ s++qky+
   XP_023908186.1 215 RVVWSVELHRKFVAAVNQLGLEkaVPKKILDLMDvEGLTRENVASHLQKYR 265
                      678***********************************************7 PP
3Response_reg86.29.3e-29271351109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl vdD+p+ ++ll+++l+k +y +v++a ++  ale+l+e++  +Dl++ D++mp+mdG++ll+     e++lp+i+++ah++ +++ + +  G
  XP_023908186.1  27 VLAVDDDPICLKLLETLLRKCQY-QVTTANQAVIALEMLRENRdkFDLVISDVNMPDMDGFKLLELVGL-EMDLPVIMLSAHSDTKLVMKGITHG 119
                     799********************.***************999889*******************87754.558********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ +eel +
  XP_023908186.1 120 AVDYLLKPVRIEELKN 135
                     *************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    
MTVEDQRGGV VSKDVSHYDK FPVGMRVLAV DDDPICLKLL ETLLRKCQYQ VTTANQAVIA  60
LEMLRENRDK FDLVISDVNM PDMDGFKLLE LVGLEMDLPV IMLSAHSDTK LVMKGITHGA  120
VDYLLKPVRI EELKNIWQHV IRRKKIDPKD QNKSPNEDKA RHGNSESGQG ASSLGNADQN  180
GKNSRKRKDQ NEDEEEEGDE NGNDSEDPSS QKKPRVVWSV ELHRKFVAAV NQLGLEKAVP  240
KKILDLMDVE GLTRENVASH LQKYRLYLKR ISSVATQQAN MVAALGGKDS SYLRMASLDG  300
FGEFRNLAGS GRLSGSTLSS YAPSGMFGRL NSPAGLNLRG ITSSGLIQPS SQNLSSSINT  360
FGKLQPTLLP SNQSAGLYQG IPTSLELNQL QQSKCATGIG DFDPIKDSTG FTVSGSFPDN  420
RVTVGSSSSL LSRASSNPLM LQGNSQQTHN RGPFGNQSSL GVASLNPESF DLSIGGSSNF  480
VNHNRSDESW QGAVQLSRFS SNALPLSEPF NHDQMASNNL GISSTSPHIG NSPIEFPSTN  540
VVSGRLEDSG DVCQEGLIGN VVHNMTYTSK QRWEEYKQDY NPNMNHSFSD INSMVSNNGI  600
VSPLGRSLDQ NSAICGRSFD VSLIGQLNGG SLSNAQHSEF ENSAVDAKIK SNEDCLLGQT  660
KSQDGFIQNG YESLDDIMNA MMKRTVLSDG EFGINAYSLG SCI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-130ARR-B family protein