PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023908576.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C2H2

Protein Properties

Length: 571aa MW: 63128.6 Da PI: 7.279

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023908576.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.3	1.5e-06	56	80	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk F r+ L+ H rtH XP_023908576.1 56 YVCElaGCGKAFDRPVKLEIHRRTH 80 99**********************9 PP
2	zf-C2H2	22.2	3.8e-07	86	111	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y C+ dC+k+F rk++L+rHi+ H XP_023908576.1 86 YACGedDCDKTFQRKEHLTRHIKDkH 111 88999*****************9766 PP
3	zf-C2H2	20	1.9e-06	157	181	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ Cgk F+r+++L+rHi H XP_023908576.1 157 KCSepGCGKIFRRQETLQRHILQnH 181 688889***************8766 PP
4	zf-C2H2	10.6	0.0018	277	299	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cgk + ++ Lk H H XP_023908576.1 277 SCPECGKLCESNRALKAHRDIeH 299 6*****************98766 PP
5	zf-C2H2	16.1	3.1e-05	308	333	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kC+ C++ F+ nLk+Hi++ H XP_023908576.1 308 HKCSwpGCDRGFTKAGNLKVHIQNvH 333 789999****************9988 PP
6	zf-C2H2	10.9	0.0014	359	378	5	23
TTTEEESSHHHHHHHHHH.T CS zf-C2H2 5 dCgksFsrksnLkrHirt.H 23 Cg Fs+k +L+ H rt H XP_023908576.1 359 GCGAGFSSKASLEEHVRTqH 378 7*****************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 571 aa Download sequence
MVVAKAMKRS APNGAEGTPT SKRVRYPEES QYQGSLDGSI PESTFTSTSA KRTKDYVCEL 60 AGCGKAFDRP VKLEIHRRTH TNERPYACGE DDCDKTFQRK EHLTRHIKDK HSDERPHICS 120 YSVTNAFGES VQCAKSFHTA AKLRRHVAAH EEKEQTKCSE PGCGKIFRRQ ETLQRHILQN 180 HLGEKAFRCT HFCEELQEQC GQAFETVGHL KGHVKRAHAI PVIRHYCDIC NTPGSQVSTA 240 GSSPDHAEIS VPTQTSRIGF TSYADLQVHI KMTHPPSCPE CGKLCESNRA LKAHRDIEHS 300 SLPERQQHKC SWPGCDRGFT KAGNLKVHIQ NVHAKQRTFI CGTFDLSQSK KVVGWTGNGC 360 GAGFSSKASL EEHVRTQHLG IPSKLAPSRL KKLRDEAASP SQSLSSMDTD ELTTPNDDDH 420 SMAMLTGYGY EKARPIACLE SHCIQRFRND YELSQHVELT HDWQVDDIED ALAEREALDG 480 GQFWIGGRED IGPSAIETQS DVQLRIKLQN ALLGDDVAGA GNMFDSNWRS PPVWESPPGG 540 TTSAISGSSR IVKDTAGVVE PMAIDPALSG P

Sequence ? help Back to Top

Protein Sequence Length: 571 aa Download sequence

MVVAKAMKRS APNGAEGTPT SKRVRYPEES QYQGSLDGSI PESTFTSTSA KRTKDYVCEL  60
AGCGKAFDRP VKLEIHRRTH TNERPYACGE DDCDKTFQRK EHLTRHIKDK HSDERPHICS  120
YSVTNAFGES VQCAKSFHTA AKLRRHVAAH EEKEQTKCSE PGCGKIFRRQ ETLQRHILQN  180
HLGEKAFRCT HFCEELQEQC GQAFETVGHL KGHVKRAHAI PVIRHYCDIC NTPGSQVSTA  240
GSSPDHAEIS VPTQTSRIGF TSYADLQVHI KMTHPPSCPE CGKLCESNRA LKAHRDIEHS  300
SLPERQQHKC SWPGCDRGFT KAGNLKVHIQ NVHAKQRTFI CGTFDLSQSK KVVGWTGNGC  360
GAGFSSKASL EEHVRTQHLG IPSKLAPSRL KKLRDEAASP SQSLSSMDTD ELTTPNDDDH  420
SMAMLTGYGY EKARPIACLE SHCIQRFRND YELSQHVELT HDWQVDDIED ALAEREALDG  480
GQFWIGGRED IGPSAIETQS DVQLRIKLQN ALLGDDVAGA GNMFDSNWRS PPVWESPPGG  540
TTSAISGSSR IVKDTAGVVE PMAIDPALSG P

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.2	2e-14	C2H2 family protein