PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023908666.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family YABBY
Protein Properties Length: 210aa    MW: 23275.5 Da    PI: 7.8956
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023908666.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY2282.5e-70101752170
           YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 
                     d+   seq+Cyv+Cn C+t+lavsvP tslfk+vtvrCGhCt+ll vn++      a + hl++s+  + ++ l+   +      +++++ s  +
  XP_023908666.1  10 DHLPPSEQLCYVHCNICDTVLAVSVPCTSLFKTVTVRCGHCTNLLPVNMRGLLLPSANQFHLGHSFFSPSHNLLEEIPNPSPNFLINQSNGSDFT 104
                     577899******************************************999999999999*****998866666555555544444444443333 PP

           YABBY  97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                           +    e+pr+p ++rPPekrqrvPsaynrfik+eiqrik+ nPdishreafsaaaknWahfP+ihfgl
  XP_023908666.1 105 MP---ARGGVSELPRPPAINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGL 175
                     22...4678899************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    
MSSSSTLSLD HLPPSEQLCY VHCNICDTVL AVSVPCTSLF KTVTVRCGHC TNLLPVNMRG  60
LLLPSANQFH LGHSFFSPSH NLLEEIPNPS PNFLINQSNG SDFTMPARGG VSELPRPPAI  120
NRPPEKRQRV PSAYNRFIKD EIQRIKSVNP DISHREAFSA AAKNWAHFPH IHFGLMPDQT  180
VKKTNVRQEG EDVLMKDGFF ASADVGVSPY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.11e-83YABBY family protein