PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023908707.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 714aa    MW: 78961.8 Da    PI: 5.583
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023908707.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS329.18.3e-1013497133374
            GRAS   3 elLlecAeavssgdle.laqalLarlselaspdgdpmqRlaayfteALaarlar.svselykal.ppsetseknsseelaalklfsevsPilkfs 94 
                     ++L++ Ae +++g++  +aq +Larl+++ sp g+p+qR+a+yf+eAL+  l++ + +++ ++l  +s+ ++ + + ++ a+k fsevsP+l+f+
  XP_023908707.1 349 DQLYQLAELIETGNNPvRAQGILARLNHQLSPIGKPFQRAAFYFKEALQLLLHNaNNTSCNASLsLSSPPPPISLIFKIGAYKSFSEVSPVLQFA 443
                     79**********87766*************************************66777777774455556667********************* PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     ++t+Nqa+lea++g + +HiiDfdi+ G+QW +L+q+La R++g p l+iT+++sp ++++ el  t+e L++fA+e+++ fef++l  ++l++ 
  XP_023908707.1 444 NFTCNQALLEALDGFDSIHIIDFDIGFGGQWSSLMQELALRQGGGPALKITAFASPFTHDELELGFTQESLKHFATEINLAFEFEFLSLESLNSG 538
                     **************************************************************************************966666665 PP

            GRAS 190 .eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                       +  Lrv++ Ea+aVnl +  ++ +  ++sl+     vL +vk+lsPk+vv  ++ ++ ++ +F +++++a++ ys lf+sl+a    ++++ +
  XP_023908707.1 539 sWPLPLRVSESEAIAVNLPIGSFSNY--PLSLPL----VLGFVKQLSPKIVVSLDRGCEQTDVQFPRHIIHAVQSYSGLFESLDAV-NVNQDALQ 626
                     236678**************877776..777777....*********************************************655.45778889 PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +Er ll++ i+++v  +  +     ++   Wr+ + ++GF+p+++s+++++qa++l+++++++g++ve+++ slvl+W++++L+s+S+Wr
  XP_023908707.1 627 RIERYLLQPGIEKIVLGRRHS----PNRTPPWRSLFLSSGFSPLTFSNFTESQAECLVQRTPVRGFHVEKNQTSLVLCWQRKELISASVWR 713
                     9**************987776....89999************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 714 aa     Download sequence    
MKAMPLSFEE FQGKGVLDFS TVSSDSLPHL HQHHHHQQQQ QLQKWHNTNK ENCHVGTEPT  60
SVLDEEESPS PPTSTSTLSS SLGNGVASTT TAAAAPENHH QPSSQTSLDI GEKCGLGMED  120
WEGVLSDSSS GQEQSILRLI MGDVEDPSLG LNKLLHQDLE FNSGFGMIDQ ADAFGCLEMP  180
NNLLPSIDPS ADFPFNGCGT NATRLGSVST PNHNPMFSVA TSNNLLPGSL SHSPAMFHHQ  240
QQQQQQVPTI EAVDEKPQIF NPQMINPARF AQNPALFMPT YGQLQEHHLV SPPLAKRHNL  300
CGAGPNYQVP FSEPGQELLR RQQQQNQLQM QKVVNNELAS EQQQQLLFDQ LYQLAELIET  360
GNNPVRAQGI LARLNHQLSP IGKPFQRAAF YFKEALQLLL HNANNTSCNA SLSLSSPPPP  420
ISLIFKIGAY KSFSEVSPVL QFANFTCNQA LLEALDGFDS IHIIDFDIGF GGQWSSLMQE  480
LALRQGGGPA LKITAFASPF THDELELGFT QESLKHFATE INLAFEFEFL SLESLNSGSW  540
PLPLRVSESE AIAVNLPIGS FSNYPLSLPL VLGFVKQLSP KIVVSLDRGC EQTDVQFPRH  600
IIHAVQSYSG LFESLDAVNV NQDALQRIER YLLQPGIEKI VLGRRHSPNR TPPWRSLFLS  660
SGFSPLTFSN FTESQAECLV QRTPVRGFHV EKNQTSLVLC WQRKELISAS VWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-128GRAS family protein