PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023908708.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 741aa    MW: 81701.5 Da    PI: 6.1769
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023908708.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3221.2e-983747403374
            GRAS   3 elLlecAeavssgdle.laqalLarlselaspdgdpmqRlaayfteALaarlarsvselyk.alppsetsekn...sseelaalklfsevsPilk 92 
                     ++L++ +e +++g++  laq++Larl+++ sp g+p+qR+a+yf+eAL+  l+++ ++ ++ +l++s+ ++      + ++ a+k fsevsP+l+
  XP_023908708.1 374 DQLYQLVELIETGNNPvLAQEILARLNHQLSPIGKPFQRAAFYFKEALQLLLHNTNNTNSNaSLNMSSPPPPPpvsLIFKIGAYKSFSEVSPVLQ 468
                     7899********87766***********************************9944433330334333332224449****************** PP

            GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                     f+++t+Nqa+lea++g +++HiiDfdi+ G+QW++L+q+La +++g p l+iT+++sp+++++ +l  t e+L++fA+e+++ fef++l  ++l+
  XP_023908708.1 469 FANFTCNQALLEALDGFDTIHIIDFDIGFGGQWASLMQELALKQGGGPALKITAFASPSTHDELQLGFTLENLKHFATEINLAFEFEFLSFESLN 563
                     ****************************************************************************************9777666 PP

            GRAS 188 dl.eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                     +   +  L+v++ Ea+aVnl +  ++ +  ++sl+     vL +vk+lsPk+vv  ++ +d+++ sF  ++++a++ ys l++sl+a    + ++
  XP_023908708.1 564 SGsWPLPLHVSESEAIAVNLPIGSFSNY--PLSLPL----VLGFVKQLSPKIVVSLDRGCDRTDLSFPLHIIHAVQSYSGLLESLDAV-NVNLDA 651
                     65236679**************877776..777777....*********************************************665.456699 PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +k+Er ll++ i+++v  + ++      +   W+  + ++GF+p+++s+++++qa++l+++++++g++ve+++ slvl+W++++L+s+S+Wr
  XP_023908708.1 652 SQKIERYLLQPGIEKIVLGRRRS----PDRTPPWSGLFLSSGFSPLTFSNFTESQAECLVQRTPVRGFHVEKKQTSLVLCWQRKELISASVWR 740
                     *****************988887....88999************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    
MKAMPLPFKE FQGKGVLDFS TASSDSLPHL HRLYQQQQLQ KWHNTNKENC YVGTEPTSVL  60
DTRSPSPPTS TSTLSSSLGN GVASTTTTAT AKAAATASES HHQPSSQTSL DIGEKCGLGM  120
EDWEGVLSDS SSGQEQSILR LIMGDIEDPS LGLNKLLHQD LEFNSGFGMI DQGAAFGCLE  180
MPNNLLPSID PSADFPFNGG GTNATRLGSV STPNHSPMFS VATSNNLLPG SLSHSPAMFH  240
QQQQQQQVQT IETVDEKPQI FNPLMIHPNQ AQYAQNPALF MPLTYAQLQE HHLGSSPLAK  300
RHNLGGIGPN YQVPKSPFSE PGQELLRRQQ QQQQNQLQML PQHIQQRPMM VSKQKMVCNE  360
LANQQQQQQQ LLFDQLYQLV ELIETGNNPV LAQEILARLN HQLSPIGKPF QRAAFYFKEA  420
LQLLLHNTNN TNSNASLNMS SPPPPPPVSL IFKIGAYKSF SEVSPVLQFA NFTCNQALLE  480
ALDGFDTIHI IDFDIGFGGQ WASLMQELAL KQGGGPALKI TAFASPSTHD ELQLGFTLEN  540
LKHFATEINL AFEFEFLSFE SLNSGSWPLP LHVSESEAIA VNLPIGSFSN YPLSLPLVLG  600
FVKQLSPKIV VSLDRGCDRT DLSFPLHIIH AVQSYSGLLE SLDAVNVNLD ASQKIERYLL  660
QPGIEKIVLG RRRSPDRTPP WSGLFLSSGF SPLTFSNFTE SQAECLVQRT PVRGFHVEKK  720
QTSLVLCWQR KELISASVWR C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-111GRAS family protein