PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023909036.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

AP2

Protein Properties

Length: 566aa MW: 62728.9 Da PI: 6.6122

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023909036.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49	1.5e-15	242	301	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_023909036.1 242 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 301 78*****************655454478446***********************98 PP
2	AP2	46.5	9.3e-15	346	395	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_023909036.1 346 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 395 9*************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 566 aa Download sequence
MSNWLGFSLT PHLRIDDGFG RDTHQDHGAF PPHLSVMPLR SDGSLCVAAD PFRRSNVADD 60 WRYEHAMGAT NPDEDGPKLE DFLGCCYSNS SPDETKVYCQ TQENQNHSNN NIYKINVNIA 120 PNNFNTNGEI DSGDNNLTTP SPLFQPYNQF NETTQALMTS SGMYKSWLGQ TPFSDAKSST 180 QPNGCSFQSL ALTMSPSAEN DIGAISPLQV VADHTRKRAV SKSLAREPVP RKSIDTFGQR 240 TSQYRGVTRH RWTGRYEAHL WDNSCRKEGQ TRKGRQVYLG GYDKEEKAAR AYDLAALKYW 300 GPTTHINFPI STYEKELEEM KNMTRQEFVA NLRRKSSGFS RGASMYRGVT RHHQHGRWQA 360 RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGTSAVT NFDISRYDVK RICSSSTLIA 420 GDLAKRSLKE SAPAAIEDYN SCAPSTSPQP LLAITSNEPS DELVDMVWTN NNNDERQQHE 480 NANTIGDATL VASSSRNSSN PGSPKCSFGA SSEYGVGGGG DYSHPYFSLQ GSKYEDGNSG 540 NENGDANRLG NLAMVHQVPM FALWNE

Sequence ? help Back to Top

Protein Sequence Length: 566 aa Download sequence

MSNWLGFSLT PHLRIDDGFG RDTHQDHGAF PPHLSVMPLR SDGSLCVAAD PFRRSNVADD  60
WRYEHAMGAT NPDEDGPKLE DFLGCCYSNS SPDETKVYCQ TQENQNHSNN NIYKINVNIA  120
PNNFNTNGEI DSGDNNLTTP SPLFQPYNQF NETTQALMTS SGMYKSWLGQ TPFSDAKSST  180
QPNGCSFQSL ALTMSPSAEN DIGAISPLQV VADHTRKRAV SKSLAREPVP RKSIDTFGQR  240
TSQYRGVTRH RWTGRYEAHL WDNSCRKEGQ TRKGRQVYLG GYDKEEKAAR AYDLAALKYW  300
GPTTHINFPI STYEKELEEM KNMTRQEFVA NLRRKSSGFS RGASMYRGVT RHHQHGRWQA  360
RIGRVAGNKD LYLGTFSTQE EAAEAYDIAA IKFRGTSAVT NFDISRYDVK RICSSSTLIA  420
GDLAKRSLKE SAPAAIEDYN SCAPSTSPQP LLAITSNEPS DELVDMVWTN NNNDERQQHE  480
NANTIGDATL VASSSRNSSN PGSPKCSFGA SSEYGVGGGG DYSHPYFSLQ GSKYEDGNSG  540
NENGDANRLG NLAMVHQVPM FALWNE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72570.1	1e-142	AP2 family protein