PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023909093.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

C3H

Protein Properties

Length: 199aa MW: 21622.1 Da PI: 8.5717

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023909093.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.7	1.6e-06	7	32	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ XP_023909093.1 7 YKGRHCKKFYTEEGCPYGDNCTFLHD 32 78888********************7 PP
2	zf-CCCH	43.4	5.8e-14	68	93	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg XP_023909093.1 68 WKTRICNKWELTGYCPFGSKCHFAHG 93 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence
GDSQRSYKGR HCKKFYTEEG CPYGDNCTFL HDEQSKNRES VAISLGPGGY GGAAASPVSG 60 PNAKPSNWKT RICNKWELTG YCPFGSKCHF AHGAAGLREA YTIIRGELHR YGGGLVEGET 120 RDSSSAPPDS KQGGVPSKTL ADSVVVSVAP VPHSDVYHMG VPSQRSSIVI QRPGQRTHQK 180 WKGPDKISRI YGDWIDDIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	3e-68	C3H family protein