PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023909247.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 544aa    MW: 60509.4 Da    PI: 5.8356
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023909247.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS431.37.5e-1321745441374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+elL++cA+a+s++ + + ++l ++ ++ +s +g+p+qRl ay++e+L ar   s++++y+al+++e +    ++ l+++++++e++P+lkf++
  XP_023909247.1 174 LKELLTACAKALSDNRMDEFDKLTEKARDAVSITGEPIQRLGAYMVEGLVARKEASGTNIYHALKCREPE---GKDLLSYMHILYEICPYLKFGY 265
                     5799*****************************************************************9...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     ++aN aI +a ++e+r+HiiDf+i +G+QW++LlqaLa+Rp+g+p++RiTg+++p ++  + + le++g+rLa + +++++p+ef+  v +   d
  XP_023909247.1 266 MAANGAIADACKNEDRIHIIDFQIAMGTQWMTLLQALAARPGGAPHVRITGIDDPVYKyaRGDGLEAVGRRLAAISAKFNIPVEFHG-VPEFAPD 359
                     *******************************************************999999**************************.799999* PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++ ++L+v+pgEalaVn+ lqlh+++desv+++++rde+L+++kslsPkvv++veqe+++n+++F++rf+e+leyy a+f+s++++lpr+s+eri
  XP_023909247.1 360 ITRDMLNVRPGEALAVNFPLQLHHTPDESVDVNNPRDELLRMIKSLSPKVVTLVEQESNTNTTPFFHRFVETLEYYLAMFESIDVTLPRNSKERI 454
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +vE+++l+r+ivn++aceg+er+erhe ++kW++rl++aGF+++pls+++++ +k+llr ++ + y++ e++g+++lgWk+r+L+s+SaW+
  XP_023909247.1 455 NVEQHCLARDIVNIIACEGKERVERHELFGKWKSRLTMAGFRQYPLSTYVNSVIKSLLRCYS-EHYNLVEKDGAMLLGWKNRNLISASAWQ 544
                     **********************************************************9999.66*************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    
MDSRQLFGIG VTSAGISFTS SHPTVSSIPT RLLGSLKFDF GNSPNSPVSS HFDSDTLTAL  60
SDGQEQHSST ENLSGVSPSC NSSLESSSYF YRPRPSLDCH QDSQELHSGG ACFIQDANCS  120
PNIKHVLLDI ETALMGPDDG EEVTTREISI PETPVQRSRS WSQEPQGGFA QGNLKELLTA  180
CAKALSDNRM DEFDKLTEKA RDAVSITGEP IQRLGAYMVE GLVARKEASG TNIYHALKCR  240
EPEGKDLLSY MHILYEICPY LKFGYMAANG AIADACKNED RIHIIDFQIA MGTQWMTLLQ  300
ALAARPGGAP HVRITGIDDP VYKYARGDGL EAVGRRLAAI SAKFNIPVEF HGVPEFAPDI  360
TRDMLNVRPG EALAVNFPLQ LHHTPDESVD VNNPRDELLR MIKSLSPKVV TLVEQESNTN  420
TTPFFHRFVE TLEYYLAMFE SIDVTLPRNS KERINVEQHC LARDIVNIIA CEGKERVERH  480
ELFGKWKSRL TMAGFRQYPL STYVNSVIKS LLRCYSEHYN LVEKDGAMLL GWKNRNLISA  540
SAWQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein