PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023909448.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

Trihelix

Protein Properties

Length: 448aa MW: 51555.4 Da PI: 6.512

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023909448.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	84.6	1.3e-26	121	218	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyf 82 +Wt+++v++Li+a+++++e++ +++ +kk++W+++sk+m+erg+++sp+qC++k+++lnkryk+++++ +++ +++++++ +++ XP_023909448.1 121 KWTDKMVRLLITAVSYIGEDVASDCgssggrrkfavlQKKGKWKSISKVMAERGYHVSPQQCEDKFNDLNKRYKRLNDMLGRGtSCQVVENPALL 215 7********************99888999999999**********************************************569999888887 PP trihelix 83 dql 85 d + XP_023909448.1 216 DVI 218 765 PP

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence
MEGNLPQGGM IPGGGGSYGG FDLQGSMRVH HQTQHPHTIH QHQSLPRQGS AVHPSIHEGF 60 PLTMGTIQNC DQTIPMVDFN KGERSKNSMS DEDEQSFTEE GVDGHNEANR GKKGSPWQRV 120 KWTDKMVRLL ITAVSYIGED VASDCGSSGG RRKFAVLQKK GKWKSISKVM AERGYHVSPQ 180 QCEDKFNDLN KRYKRLNDML GRGTSCQVVE NPALLDVIDY LTEKEKDDVR KILSSKQLFY 240 EEMCSYHNSN RLHLPHDQAL QHSLQLALKS RDDHDTDDAR KHQHDDLDED DQDMETDDHD 300 DFEESHALHG DSRGIHGVLG SAKKFRQGLA HEDINIGNPL NSQDYNRSPY SQAQIAQSDM 360 NQALPENMRA AWFQKQWIES RSLHLEEQKL QIQVEMLELE KQRFKWQRFS KKRDHELEKL 420 RMENERMKLE NERMALELKR KEMSAGFN

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence

MEGNLPQGGM IPGGGGSYGG FDLQGSMRVH HQTQHPHTIH QHQSLPRQGS AVHPSIHEGF  60
PLTMGTIQNC DQTIPMVDFN KGERSKNSMS DEDEQSFTEE GVDGHNEANR GKKGSPWQRV  120
KWTDKMVRLL ITAVSYIGED VASDCGSSGG RRKFAVLQKK GKWKSISKVM AERGYHVSPQ  180
QCEDKFNDLN KRYKRLNDML GRGTSCQVVE NPALLDVIDY LTEKEKDDVR KILSSKQLFY  240
EEMCSYHNSN RLHLPHDQAL QHSLQLALKS RDDHDTDDAR KHQHDDLDED DQDMETDDHD  300
DFEESHALHG DSRGIHGVLG SAKKFRQGLA HEDINIGNPL NSQDYNRSPY SQAQIAQSDM  360
NQALPENMRA AWFQKQWIES RSLHLEEQKL QIQVEMLELE KQRFKWQRFS KKRDHELEKL  420
RMENERMKLE NERMALELKR KEMSAGFN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-179	Trihelix family protein