PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023910485.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

HD-ZIP

Protein Properties

Length: 198aa MW: 22775.5 Da PI: 5.8157

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023910485.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.3	1.3e-18	10	62	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++f++eq++ Le +Fe+++ p ++ +++LA++lgL rqV +WFqNrRa+ k XP_023910485.1 10 MQRFSDEQIKLLEIMFEEESRPETRIKQKLANELGLHPRQVATWFQNRRARLK 62 578************************************************98 PP
2	HD-ZIP_I/II	103.3	2e-33	10	100	3	93
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +r+s+eq+klLE +Feee++ e++ K++la+eLgl+prqva WFqnrRAR ktkq+E++y+ Lk++yd+l+++ e+L++e++ L +l++ XP_023910485.1 10 MQRFSDEQIKLLEIMFEEESRPETRIKQKLANELGLHPRQVATWFQNRRARLKTKQIEREYSLLKASYDTLASNFESLKTENQLLLLQLQK 100 589********************************************************************************99988876 PP

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence
MASKRKNKNM QRFSDEQIKL LEIMFEEESR PETRIKQKLA NELGLHPRQV ATWFQNRRAR 60 LKTKQIEREY SLLKASYDTL ASNFESLKTE NQLLLLQLQK LKNMLDKQHG KNGKSSDNNS 120 VKGDSTSKSK EKPSILSESV NHNINMFISD ANCEDAECTE EEPGMLNIAE PIDGSLTSSE 180 DWCSFLDQSS GNSQWWEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	57	65	RRARLKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.2	3e-36	HD-ZIP family protein