PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023910582.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 285aa MW: 32274.1 Da PI: 7.7373

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023910582.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.6	5.3e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed llv+++k +G g+W++ ++ g+ R++k+c++rw++yl XP_023910582.1 14 RGPWTPKEDTLLVNYIKAHGEGHWRSLPKNAGLLRCGKSCRLRWLNYL 61 89****************************99**********97 PP
2	Myb_DNA-binding	47.6	3.8e-15	68	112	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g+ ++E++l+++++ +lG++ W++Ia++++ gRt++++k++w+++l XP_023910582.1 68 GNIAADEEDLIIRLHSLLGNR-WSLIAARLP-GRTDNEIKNYWNSHL 112 555689*************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence
MGRAPCCSKI GMNRGPWTPK EDTLLVNYIK AHGEGHWRSL PKNAGLLRCG KSCRLRWLNY 60 LRPDIKRGNI AADEEDLIIR LHSLLGNRWS LIAARLPGRT DNEIKNYWNS HLSKKVKNSV 120 KNVQNDHKGA SNCVQVPNRR KKKNDNQDNS NGEMIIKTKV HQPKAVRISP FSITRNNSIE 180 SMVGGSSSNG DGSNNNNGLD HAEALNCPWF WSDHKDADIN GGEALVCENN HSDFVNNYDD 240 ACYFSCQNYS EATENMLDKI YEEYQQLLED ENELPLDSFV KSLLI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16720.1	6e-60	MYB family protein