PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023910685.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28528.5 Da    PI: 8.6931
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023910685.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF961.6e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+ey++
  XP_023910685.1  9 KRIENKINRQVTFSKRRGGLLKKAHEISVLCDAEVALIVFSHKGKLFEYAT 59
                    79***********************************************86 PP
2K-box1059.2e-35761742100
           K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                     ++++ ++++++ + +++ e+++Lk+++e Lqr++Rh+lGedL++Ls+k+Lq+LeqqL+++lk+iRs+Kn+l++e+i++lq+kek++qe+n+ L +
  XP_023910685.1  76 AERQLVATDSELQGNWTMEYSRLKAKVELLQRNHRHYLGEDLDTLSFKQLQNLEQQLDTALKQIRSRKNQLMYESISDLQRKEKAIQEQNTILAN 170
                     56667777777889********************************************************************************* PP

           K-box  97 klee 100
                     k++e
  XP_023910685.1 171 KIKE 174
                     *987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MGRGRVQLKR IENKINRQVT FSKRRGGLLK KAHEISVLCD AEVALIVFSH KGKLFEYATD  60
SCMEKILERY ERYSYAERQL VATDSELQGN WTMEYSRLKA KVELLQRNHR HYLGEDLDTL  120
SFKQLQNLEQ QLDTALKQIR SRKNQLMYES ISDLQRKEKA IQEQNTILAN KIKEKEKTVA  180
QQAQAQAQWE QQNHGPNGSS SFMLPQPLPC LNIGGTHHEE APELRRNELE LTLEPIYSCH  240
LGCFAT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-115MIKC_MADS family protein