PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023910862.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 423aa MW: 46626.8 Da PI: 8.1825

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023910862.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.9	2e-14	244	289	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRR++iN+++ +L++++P+a K +Ka++L +++eY+k Lq XP_023910862.1 244 HNQSERRRREKINQKMKTLQRMVPNA-----NKTDKASMLDEVIEYLKLLQ 289 9**********************8.....6**************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence
MSQYIVPNWN LKHQRQDQVE GEEGNRSSHV HNQQQNHPSS TSPLVPNMSS YEVAELTWEN 60 GQLAMNRLRG LIPTTPTKPT WGRAGDTLES IVHQATCHKQ ISSVLQHDHA PAANIVPIDT 120 VSTGGTWAET ESSGQVQVAP TTLMRKRTRS DSGQCHGRKI CGSMKEDSAD HTSKSATFCR 180 DNDTTMMTWA SFESPRSLKT RTTEMDSSCH DGLGNRDDDE EHETNNIEMG RSHSTRKTRA 240 AAIHNQSERR RREKINQKMK TLQRMVPNAN KTDKASMLDE VIEYLKLLQA QVHQLMSMRS 300 MPQMMMPLGM QQHLQMSLLA RMGMGMGVGL GMGMGMGMRD MTTMSRSAPQ TLASLINPAS 360 VSATAPTLVS PPFVLTSMTP TDASAQPKPN SGTNAAVPLP DPYCALLAQS MNIDLYNKIA 420 AVN

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence

MSQYIVPNWN LKHQRQDQVE GEEGNRSSHV HNQQQNHPSS TSPLVPNMSS YEVAELTWEN  60
GQLAMNRLRG LIPTTPTKPT WGRAGDTLES IVHQATCHKQ ISSVLQHDHA PAANIVPIDT  120
VSTGGTWAET ESSGQVQVAP TTLMRKRTRS DSGQCHGRKI CGSMKEDSAD HTSKSATFCR  180
DNDTTMMTWA SFESPRSLKT RTTEMDSSCH DGLGNRDDDE EHETNNIEMG RSHSTRKTRA  240
AAIHNQSERR RREKINQKMK TLQRMVPNAN KTDKASMLDE VIEYLKLLQA QVHQLMSMRS  300
MPQMMMPLGM QQHLQMSLLA RMGMGMGVGL GMGMGMGMRD MTTMSRSAPQ TLASLINPAS  360
VSATAPTLVS PPFVLTSMTP TDASAQPKPN SGTNAAVPLP DPYCALLAQS MNIDLYNKIA  420
AVN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	248	253	ERRRRE
2	249	254	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	4e-36	bHLH family protein