PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023910903.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 235aa MW: 25787.4 Da PI: 8.3397

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023910903.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.3	3.5e-18	34	79	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v+++G ++W+ I+r++ gR++k+c++rw + XP_023910903.1 34 KGPWSAEEDRILTRLVERYGARNWSVISRYIK-GRSGKSCRLRWCNQ 79 79***************************9.*********985 PP
2	Myb_DNA-binding	56.8	5.2e-18	88	130	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ede ++ a++q+G++ W+tIar ++ gRt++ +k++w++ XP_023910903.1 88 PFSPAEDETILAAHAQYGNR-WATIARLLP-GRTDNAVKNHWNST 130 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence
MEASSTTSSS DSSSSDSSLS SKTPRNHNRP EKIKGPWSAE EDRILTRLVE RYGARNWSVI 60 SRYIKGRSGK SCRLRWCNQL SPNVEHRPFS PAEDETILAA HAQYGNRWAT IARLLPGRTD 120 NAVKNHWNST LKRRVKDQQM IEGGGCSIST NSLINNEGFA SGSLHCNNGF DEDEQFTALT 180 LAPPGIGGGG GGNGGVAERR SESLPTGFWD VMRDVIAREV RDYVSSTLSE NSGFH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	4e-58	MYB family protein