PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023911376.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family LBD
Protein Properties Length: 204aa    MW: 22294.3 Da    PI: 7.2744
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023911376.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.61.1e-3991091100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++Cv+apyf +eq +++fa+vhk+FGasn +kll ++p ++r da+ +l+yeA  r+rdPvyG+vg+i++lqqq+ +l+ael
  XP_023911376.1   9 PCGACKFLRRKCVNGCVFAPYFDSEQgTAHFAAVHKVFGASNASKLLLRIPAHKRLDAVVTLCYEALSRVRDPVYGCVGHIFTLQQQVVNLQAEL 103
                     7***********************9989******************************************************************* PP

          DUF260  95 allkee 100
                     a+++++
  XP_023911376.1 104 AYVQAH 109
                     **9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    
MSASNGGGPC GACKFLRRKC VNGCVFAPYF DSEQGTAHFA AVHKVFGASN ASKLLLRIPA  60
HKRLDAVVTL CYEALSRVRD PVYGCVGHIF TLQQQVVNLQ AELAYVQAHL STFQRLPPLP  120
PPQSQSPSPT NHHHCTSDLA TSSDLQHSLS MQIDPIQPQP TSTELTSYFD PLAEELEDGD  180
VQALARELIS RYLPGVRFRA SSPH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.15e-70LBD family protein