PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023911890.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 267aa MW: 30749 Da PI: 7.9849

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023911890.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.9	6.5e-15	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W ++Ed++l+++++ +G g W+ +++ g++R++k+c++rw++yl XP_023911890.1 13 RGAWCAWEDDILKNYIEIHGEGKWTDLPQRAGLRRCGKSCRLRWLNYL 60 89********************************************97 PP
2	Myb_DNA-binding	55.5	1.3e-17	66	110	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++++E++l+++++k+lG+ W++Iar+++ gRt++++k++w++ XP_023911890.1 66 RGNFSKDEEDLIIKLHKLLGNS-WSLIARRLP-GRTDNEIKNYWNTI 110 89****************99.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence
MGRRPCCAKG VIRGAWCAWE DDILKNYIEI HGEGKWTDLP QRAGLRRCGK SCRLRWLNYL 60 RPDIKRGNFS KDEEDLIIKL HKLLGNSWSL IARRLPGRTD NEIKNYWNTI LSKRIKNLTL 120 DSNPGIKPVA HPIFRPKAVR CTKVILPWQP DNNQILFNEN IVPYGNRENL LPFVQPENNI 180 SNFQIDLDTN YLLRSDVQNS NGHQTNEINV CDIVLNLPVS GCDAKLQDLM DEGKPENWRA 240 TNPFQPNEAM DLNTLASFLD SEDTWIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09460.1	3e-55	MYB family protein