PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023911967.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MIKC_MADS
Protein Properties Length: 338aa    MW: 38200.8 Da    PI: 5.1211
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023911967.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF885e-28958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l  +s
  XP_023911967.1  9 KRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLTHFS 58
                    79********************************************9997 PP
2K-box23.22.8e-09106180579
           K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 
                     s+ s+++++ e+ q+e+++++ ++++ ++++R +  e +   s +eL + e++L + l++++++K++ll++++++
  XP_023911967.1 106 SNPSAQNSNVEEAQKEISNMQHQLQMAENQLRIFEPEPILITSGEELDSCEKNLLETLRRVKQRKEDLLRNHLST 180
                     66778999***************************************************************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    
MGRVKLQIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLTHFSGK  60
RRIEDVLARY INLPDHDRGG AVQNREFLLG TLQKIKNEND IAFQLSNPSA QNSNVEEAQK  120
EISNMQHQLQ MAENQLRIFE PEPILITSGE ELDSCEKNLL ETLRRVKQRK EDLLRNHLST  180
YDPSSVQIYF DTQDGVPTSF ENEIVTWLPE NGHNPNQICG GSESPCTAMR NQSSTAMYDQ  240
LSQATNINVE PCNMGGCQMS NQRDDGLPSW HHSYTATELL STFMPPNSFP STKQEIAGAS  300
ISSMMSQQQV ETASNCLQMP SSDEDANYES KLSQFKVE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164171RRVKQRKE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.15e-97MIKC_MADS family protein