PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023911971.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family M-type_MADS
Protein Properties Length: 243aa    MW: 28693.8 Da    PI: 9.9289
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023911971.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.74.1e-20858151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien ++ qv fskRr  ++ K +E+SvLCd++ a+i fs++g+l  ++s
  XP_023911971.1  8 KKIENPTKCQVAFSKRRSSLFRKTHEISVLCDVDLALIAFSPSGRLNQFCS 58
                    68***********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MGPKVDMKKI ENPTKCQVAF SKRRSSLFRK THEISVLCDV DLALIAFSPS GRLNQFCSQK  60
RIEDVMQRYI DLPPDKRFRH IKNIEKTQQM LSQLGHLKDE ESKMHYINNQ ISVSSFVLEF  120
PFEQIIDFVL IIISMFNNFD YVSPKLTELK LKKSKIEHEI LAANLRDYEP EPERDPSLAQ  180
LLWCEKNLKT SLQRVMNKKE LCLGICHLHM RISQFRVMIR QSRWWGLVVK FLHLFPATVV  240
RMN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.15e-27MIKC_MADS family protein