PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023912243.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MIKC_MADS
Protein Properties Length: 243aa    MW: 27894.1 Da    PI: 9.697
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023912243.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.78.8e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+ rqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+eyss
  XP_023912243.1  9 KRIENKISRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSS 59
                    79***********************************************96 PP
2K-box104.41.4e-34791745100
           K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     + ++++++++  ++ e+ kL +++e Lqr++R+++GedL++Ls++eLq+Leqq++ +lk+iR++Kn+l++e++ elqkkek+lqe+n+ L kkl+
  XP_023912243.1  79 QLVATDSETQGGWCMEFPKLTARVEVLQRNIRNFMGEDLDPLSFRELQNLEQQIDAGLKRIRTRKNQLMHESVMELQKKEKSLQEQNNLLAKKLK 173
                     555567777889*********************************************************************************98 PP

           K-box 100 e 100
                     e
  XP_023912243.1 174 E 174
                     6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MGRGRVQLKR IENKISRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLFEYSSD  60
SSMETILERY ERYSFAERQL VATDSETQGG WCMEFPKLTA RVEVLQRNIR NFMGEDLDPL  120
SFRELQNLEQ QIDAGLKRIR TRKNQLMHES VMELQKKEKS LQEQNNLLAK KLKENEKNMP  180
EKAHQEQPSL GLLSLPQQPM PSTLPLPSLT IGGAFQERAV DEDAGVQTRP TVMPPWMLRH  240
VNG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-84MIKC_MADS family protein