PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023912244.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MIKC_MADS

Protein Properties

Length: 244aa MW: 27948.7 Da PI: 9.2967

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023912244.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	99.8	1e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s XP_023912244.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP
2	K-box	89.8	5.1e-30	85	173	12	100
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++ e +++e+ kLk++ e+ q++qR+llGedL++L+ ++L++Le+qL++slk++Rs+K++++l+q+++lq+ke+ l e+n+aL+ kl+e XP_023912244.1 85 KELEISYREYLKLKARFESVQQTQRNLLGEDLGPLNTNDLERLERQLDSSLKQVRSTKTQYMLDQLSDLQNKEHLLVEANRALTIKLDE 173 5677889****************************************************************************999876 PP

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCST 60 SSMLKTLERY QKCSYGAVEV NKPGKELEIS YREYLKLKAR FESVQQTQRN LLGEDLGPLN 120 TNDLERLERQ LDSSLKQVRS TKTQYMLDQL SDLQNKEHLL VEANRALTIK LDEISSRNNL 180 RQSWEGGEQS MSYGPQNAQS QRFFQPLDCN PTLQIGYNAS GSDQQLSGTT HAQQVNGFIP 240 GWML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02310.1	1e-127	MIKC_MADS family protein