PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023912894.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family LBD
Protein Properties Length: 205aa    MW: 22270.2 Da    PI: 5.6437
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023912894.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.51e-42401391100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q+++l+a+la
  XP_023912894.1  40 PCAACKILRRRCAEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQDLPESQRADAVSSMVYEAGARIRDPVYGCAGAICQLQKQVNELQAQLA 134
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_023912894.1 135 KAQAE 139
                     *9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    
MDCSDTNTNS TTSSTPLSHS PSSSSSPSSS PPSPPIVISP CAACKILRRR CAEKCVLAPY  60
FPPTEPAKFT IAHRVFGASN IIKFLQDLPE SQRADAVSSM VYEAGARIRD PVYGCAGAIC  120
QLQKQVNELQ AQLAKAQAEL VNMQCQQANL VALICMEMSQ SPQATVQQSL ESNFITSTPN  180
SYQNNPCFLN EDNNPCSLWD HPLWT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.12e-67LBD family protein