PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023913117.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 453aa MW: 49728 Da PI: 6.413

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023913117.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.7	6.5e-06	344	382	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L XP_023913117.1 344 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 382 5778999********998.....8**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence
MADEFNTSGN WWDSTSRSRF ESGTSSSSGL NNSGSFGWPS DMADIKARTH TMDSMSSVSG 60 SSVVFQEPQK LQGHESAGGG DPSLQMMGLG LSTQAMDWNQ SLLRGEKAAD SSFRAMLQEN 120 LNSNTNFQQE TGMGSSQVQW RSEKMFSGMS GGESSSNEFK QLNRGFSLDQ PSFSPQYSSG 180 DSTVTCQGLP SSFQMDSSAM YGSPSTILQG LLGPDNNQPQ QPSFENRPMN FSYPANYGVN 240 SSELLPSWSA KVPPFLRSSP PKQTVPHNQL HFSNNAPFWN ASEAAMKGFF PLMQQQFPTT 300 SFEEKPKNIS EVRDSSTVVK KSGSEATSKR PRNETQTPLP AFKVRKEKMG DRITALQQLV 360 SPFGKTDTAS VLSEAIEYIK FLHEQVTVLS TPYMKSGAPI QHQQNSDKSK DPEGPKQDLR 420 SRGLCLVPVS STYPVTHETT VDFWTPTFGG TFR

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence

MADEFNTSGN WWDSTSRSRF ESGTSSSSGL NNSGSFGWPS DMADIKARTH TMDSMSSVSG  60
SSVVFQEPQK LQGHESAGGG DPSLQMMGLG LSTQAMDWNQ SLLRGEKAAD SSFRAMLQEN  120
LNSNTNFQQE TGMGSSQVQW RSEKMFSGMS GGESSSNEFK QLNRGFSLDQ PSFSPQYSSG  180
DSTVTCQGLP SSFQMDSSAM YGSPSTILQG LLGPDNNQPQ QPSFENRPMN FSYPANYGVN  240
SSELLPSWSA KVPPFLRSSP PKQTVPHNQL HFSNNAPFWN ASEAAMKGFF PLMQQQFPTT  300
SFEEKPKNIS EVRDSSTVVK KSGSEATSKR PRNETQTPLP AFKVRKEKMG DRITALQQLV  360
SPFGKTDTAS VLSEAIEYIK FLHEQVTVLS TPYMKSGAPI QHQQNSDKSK DPEGPKQDLR  420
SRGLCLVPVS STYPVTHETT VDFWTPTFGG TFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	6e-94	bHLH family protein