PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023913154.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

Trihelix

Protein Properties

Length: 631aa MW: 71869.3 Da PI: 6.0145

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023913154.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48	3.3e-15	100	156	2	63
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykk 63 W ++evlaL+++r++me+++ + We+vs+k++e gf+rs+++Ck+k+e+ ++++ + XP_023913154.1 100 WINEEVLALLRIRSSMENWFPEF-----TWEHVSRKLAELGFRRSAEKCKDKFEEESRYFNN 156 9*****************998.....9****************************976 PP
2	trihelix	96.7	2e-30	480	565	1	86
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++evlaLi++r ++ + ++ + k+plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql XP_023913154.1 480 RWPRDEVLALINLRCSLYGNGEDkEGTKAPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SLDSRTCPYFHQLS 565 8**************99999724699***************************************8.9999******95 PP

Sequence ? help Back to Top
Protein Sequence Length: 631 aa Download sequence
MFDGVSDQFH QFIAASRTTL PLPPSLSFPI HASSPPPTTF PPYDPYNPSH QVPLQPNLLH 60 QLQHQPPTQK HEEKEENNLV PMNLEMERDR SIPEPMDPVW INEEVLALLR IRSSMENWFP 120 EFTWEHVSRK LAELGFRRSA EKCKDKFEEE SRYFNNNINY SKNYRFLSEL EEIYHNEQNR 180 HQVESAEKNQ RVEKPSDQQG EEDKLGPSLE VKSPGDGTVN EKQIHDENNE TDLVEGKSKS 240 NIKKRKRQKN FEMLKGLCEK IVSKMMAQQE EMHNRLLEDM VKRDEEKVAK EEAWKKQEMD 300 RMNKELEIMA QEQAIAGDRQ ATIIEFLKQF TSSAFAICFE ERHVQNSLKV PKSSNSHTPS 360 SSSSIEAQNP NPTCDVNNQN TVEALPSSTI TQVQNSCFRS SQGDSITPTL IISKTLAPQN 420 PTSTLSPNTP KVPTSSTLAI ASQDPNSLNT QNNSLTPTSI STQKASPNPI TNAKDDLGRR 480 WPRDEVLALI NLRCSLYGNG EDKEGTKAPL WERISQGMLE LGYKRSAKRC KEKWENINKY 540 FRKTKDVNKK RSLDSRTCPY FHQLSTLYNQ GTLVAPSEGP ENRLIEPENC SALPEVGHID 600 NSSQGVSSNS TMHVAEGEKI NAQVPSFEFE F

Sequence ? help Back to Top

Protein Sequence Length: 631 aa Download sequence

MFDGVSDQFH QFIAASRTTL PLPPSLSFPI HASSPPPTTF PPYDPYNPSH QVPLQPNLLH  60
QLQHQPPTQK HEEKEENNLV PMNLEMERDR SIPEPMDPVW INEEVLALLR IRSSMENWFP  120
EFTWEHVSRK LAELGFRRSA EKCKDKFEEE SRYFNNNINY SKNYRFLSEL EEIYHNEQNR  180
HQVESAEKNQ RVEKPSDQQG EEDKLGPSLE VKSPGDGTVN EKQIHDENNE TDLVEGKSKS  240
NIKKRKRQKN FEMLKGLCEK IVSKMMAQQE EMHNRLLEDM VKRDEEKVAK EEAWKKQEMD  300
RMNKELEIMA QEQAIAGDRQ ATIIEFLKQF TSSAFAICFE ERHVQNSLKV PKSSNSHTPS  360
SSSSIEAQNP NPTCDVNNQN TVEALPSSTI TQVQNSCFRS SQGDSITPTL IISKTLAPQN  420
PTSTLSPNTP KVPTSSTLAI ASQDPNSLNT QNNSLTPTSI STQKASPNPI TNAKDDLGRR  480
WPRDEVLALI NLRCSLYGNG EDKEGTKAPL WERISQGMLE LGYKRSAKRC KEKWENINKY  540
FRKTKDVNKK RSLDSRTCPY FHQLSTLYNQ GTLVAPSEGP ENRLIEPENC SALPEVGHID  600
NSSQGVSSNS TMHVAEGEKI NAQVPSFEFE F

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	242	249	IKKRKRQK
2	243	250	KKRKRQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28300.1	2e-89	Trihelix family protein