PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023913350.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

Trihelix

Protein Properties

Length: 490aa MW: 56136.1 Da PI: 6.2885

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023913350.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76.2	5.4e-24	119	218	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 +Wt+ +v++Li a+ +++++ + + +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++ ++ XP_023913350.1 119 KWTDTMVRLLIMAVYYIGDEAGPEGtdqnakkkssgllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQSL 213 7************98888885322445677888999******************************************559*****9 PP trihelix 82 fdqle 86 ++ ++ XP_023913350.1 214 LETMD 218 99997 PP

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence
MEPNVLGGGM FSNIGSGMLG LELPVHQHQQ QQKQQQQQQQ NPTNTQNSHH LNHHTQMLSY 60 PHNNDPDHHP PQQSLKFPFA QKAKQPISLS DEEDPAGFGA DDNNSGDAKR KNSPWQRMKW 120 TDTMVRLLIM AVYYIGDEAG PEGTDQNAKK KSSGLLQKKG KWKSVSRAMM EKGFYVSPQQ 180 CEDKFNDLNK RYKRVNDILG KGTACRVVEN QSLLETMDLT PKMKEEVRKL LNSKHLFFRE 240 MCAYHNSCGH GVVNQSAEVA TEPSNSHVQN QQAQQQRCFH SSENAVGGAN MSEGSKMVKG 300 GSGEEDEEDD EDEDDSDEDE DEDEDEEDQG GSRGHSGHGV LHEDEDDNEE RCSSRNKRAR 360 KGVFSNGSAQ LMQQLRCELV SMVQDGAKSP WDKKQWMRTR LMQLEEQQVM YQCQAFELEK 420 QRLKWVKFSS KKEREMDRAK LENERRRLQN ERMVLLVRQK EIELLDLQHQ HHHQQQHSSN 480 KRGDPSSITG

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence

MEPNVLGGGM FSNIGSGMLG LELPVHQHQQ QQKQQQQQQQ NPTNTQNSHH LNHHTQMLSY  60
PHNNDPDHHP PQQSLKFPFA QKAKQPISLS DEEDPAGFGA DDNNSGDAKR KNSPWQRMKW  120
TDTMVRLLIM AVYYIGDEAG PEGTDQNAKK KSSGLLQKKG KWKSVSRAMM EKGFYVSPQQ  180
CEDKFNDLNK RYKRVNDILG KGTACRVVEN QSLLETMDLT PKMKEEVRKL LNSKHLFFRE  240
MCAYHNSCGH GVVNQSAEVA TEPSNSHVQN QQAQQQRCFH SSENAVGGAN MSEGSKMVKG  300
GSGEEDEEDD EDEDDSDEDE DEDEDEEDQG GSRGHSGHGV LHEDEDDNEE RCSSRNKRAR  360
KGVFSNGSAQ LMQQLRCELV SMVQDGAKSP WDKKQWMRTR LMQLEEQQVM YQCQAFELEK  420
QRLKWVKFSS KKEREMDRAK LENERRRLQN ERMVLLVRQK EIELLDLQHQ HHHQQQHSSN  480
KRGDPSSITG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	2e-74	Trihelix family protein