PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023913355.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

Trihelix

Protein Properties

Length: 552aa MW: 60095.7 Da PI: 6.4197

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023913355.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59.8	6.7e-19	169	255	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +L++a++++ ++l+rg+l++ +Weev++ + r ++ ++s +qCk+k +nl+kryk +++++ ++ s+s++p+f+++e XP_023913355.1 169 EWSDAAIACLLDAYTDKFTQLNRGNLRGRDWEEVAATVseRCEKQTKSVEQCKNKVDNLKKRYKLERQRMTNG-GISVSHWPWFKHME 255 5***********************************777778899********************99.67778******8 PP

Sequence ? help Back to Top
Protein Sequence Length: 552 aa Download sequence
MASSCDDFSL LDDDHDHAHH HSHQSNPNPN HPHPTSHHLH QSYAPHRFST RATTQIHAPP 60 PPQQQTQSII SSSIAASPQG INGGEQQEGD EEEEEEDDGE DYNDAGFCSN PFDNGGAEPN 120 RVRVDVRSEK RKDRDELSDG ANNYGYNKKS KPSGSAGASG GEYRKDREEW SDAAIACLLD 180 AYTDKFTQLN RGNLRGRDWE EVAATVSERC EKQTKSVEQC KNKVDNLKKR YKLERQRMTN 240 GGISVSHWPW FKHMENIVGN SLPVKAAAGG DDDKGGGSSA TTPRQSKRSA IAMPGPVGPI 300 NNVKSKSMSN PRWRRVVFKV SGVALAGTGP NNIDPKVVML IAREVAIACR LGVEVAIVVG 360 GRNFFCGDTW VTATGLERCT AYQIGMMATV MNSVLLQSAL EKLGVQTRVQ TAFTMLEVAE 420 PYSRQRAIRH LEKGRVVIFG GIGSGFGNPT FSTDTAAAVR ASEIHADAVL KGTNVDGVYD 480 CTSRDNNFTF EHISFSDLTA RGATSMDTMA LNYCDENSIP VVVFNLLEPG NISKALCGEQ 540 VGTLIDQSGR IS

Sequence ? help Back to Top

Protein Sequence Length: 552 aa Download sequence

MASSCDDFSL LDDDHDHAHH HSHQSNPNPN HPHPTSHHLH QSYAPHRFST RATTQIHAPP  60
PPQQQTQSII SSSIAASPQG INGGEQQEGD EEEEEEDDGE DYNDAGFCSN PFDNGGAEPN  120
RVRVDVRSEK RKDRDELSDG ANNYGYNKKS KPSGSAGASG GEYRKDREEW SDAAIACLLD  180
AYTDKFTQLN RGNLRGRDWE EVAATVSERC EKQTKSVEQC KNKVDNLKKR YKLERQRMTN  240
GGISVSHWPW FKHMENIVGN SLPVKAAAGG DDDKGGGSSA TTPRQSKRSA IAMPGPVGPI  300
NNVKSKSMSN PRWRRVVFKV SGVALAGTGP NNIDPKVVML IAREVAIACR LGVEVAIVVG  360
GRNFFCGDTW VTATGLERCT AYQIGMMATV MNSVLLQSAL EKLGVQTRVQ TAFTMLEVAE  420
PYSRQRAIRH LEKGRVVIFG GIGSGFGNPT FSTDTAAAVR ASEIHADAVL KGTNVDGVYD  480
CTSRDNNFTF EHISFSDLTA RGATSMDTMA LNYCDENSIP VVVFNLLEPG NISKALCGEQ  540
VGTLIDQSGR IS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	0.0	Trihelix family protein