PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023913524.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 435aa MW: 48690.9 Da PI: 7.5489

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023913524.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.4	2.8e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++++G g+W+++++ g+ R++k+c++rw +yl XP_023913524.1 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	46.5	8.2e-15	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +++eE+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++ XP_023913524.1 67 RGTFSQEEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110 899*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence
MGRHSCCYKQ KLRKGLWSPE EDEKLLRHIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY 60 LRPDLKRGTF SQEEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CLKKKLRQRG 120 IDPVTHKPIS EVENVEDIDT SAKSRDKMSV LSNELDLLKA ENSNQEATLL EQRPSSIASQ 180 GYPLEVQGSS SSKITNNNNS MTPRANKDFF QERFVTSHQE SSTTNDLVGH YPLQQLNYAS 240 NARLQTNSNS NSNQWFTQTG KTFDMNSEYT SNAISTILPP STSSYLPPSI GYKPSLTFPT 300 DNISIGSFNV NGSRYWETTS ASTTTNNSNS SSGSSSSAEL QHNSSLLETS MFSWGLESQP 360 EDIKWTDYLN NPLLVAAALQ NQTPQSIYNE IKSETQLVTE SSSAMWPHSK QQGTLQTSDI 420 CGKDIQRLTA AFGHT

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence

MGRHSCCYKQ KLRKGLWSPE EDEKLLRHIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQEEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CLKKKLRQRG  120
IDPVTHKPIS EVENVEDIDT SAKSRDKMSV LSNELDLLKA ENSNQEATLL EQRPSSIASQ  180
GYPLEVQGSS SSKITNNNNS MTPRANKDFF QERFVTSHQE SSTTNDLVGH YPLQQLNYAS  240
NARLQTNSNS NSNQWFTQTG KTFDMNSEYT SNAISTILPP STSSYLPPSI GYKPSLTFPT  300
DNISIGSFNV NGSRYWETTS ASTTTNNSNS SSGSSSSAEL QHNSSLLETS MFSWGLESQP  360
EDIKWTDYLN NPLLVAAALQ NQTPQSIYNE IKSETQLVTE SSSAMWPHSK QQGTLQTSDI  420
CGKDIQRLTA AFGHT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	118	LKKKLRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09540.1	1e-104	MYB family protein