PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023913718.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

AP2

Protein Properties

Length: 532aa MW: 58305.7 Da PI: 7.2214

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023913718.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	48	3.1e-15	165	224	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_023913718.1 165 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 224 57*****************666664477446***********************98 PP
2	AP2	47.2	5.6e-15	267	318	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_023913718.1 267 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 318 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 532 aa Download sequence
MDSSPHQNWL GFSLSNHSNL PSHSSPLSLF HSFTSSSSGS VVDAAATEKD ATDLSIFTGG 60 PKLEDFLGGG STATPPLAQF SNETSVTTVN HVSSTHPHTE TEHDNMYESE LKTIAASFLR 120 GFSTEQQQQQ QQQQTQTQTQ PQNLHVATTE PPPKKTVDTF GQRTSIYRGV TRHRWTGRYE 180 AHLWDNSCRR EGQSRKGRQV YLGGYDKEEK AARAYDLAAL KYWGPTTTTN FPVCNYEKEL 240 EEMKNMTRQE FVASLRRKSS GFSRGASIYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS 300 TQEEAAEAYD IAAIKFRGLN AVTNFDMSRY DVKSIANSNL PIGGMSSKSK NSSDSAASDS 360 KSIDGGSRSD ERDLSSASSI TFASQPSSSS LSFAIPIKQD PSDYWSILGY QNSATSFGNA 420 KNPSVEPHLI PSTTNVSAYH NTTTLPFNMD YCASSNSASE SNNGYFNVGY NVHQQNNGTS 480 HIPFATPIAL SGSNSYNEGS SGYGSSWIGP ALHTFQTHAK PNLFQTPIFG ME

Sequence ? help Back to Top

Protein Sequence Length: 532 aa Download sequence

MDSSPHQNWL GFSLSNHSNL PSHSSPLSLF HSFTSSSSGS VVDAAATEKD ATDLSIFTGG  60
PKLEDFLGGG STATPPLAQF SNETSVTTVN HVSSTHPHTE TEHDNMYESE LKTIAASFLR  120
GFSTEQQQQQ QQQQTQTQTQ PQNLHVATTE PPPKKTVDTF GQRTSIYRGV TRHRWTGRYE  180
AHLWDNSCRR EGQSRKGRQV YLGGYDKEEK AARAYDLAAL KYWGPTTTTN FPVCNYEKEL  240
EEMKNMTRQE FVASLRRKSS GFSRGASIYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS  300
TQEEAAEAYD IAAIKFRGLN AVTNFDMSRY DVKSIANSNL PIGGMSSKSK NSSDSAASDS  360
KSIDGGSRSD ERDLSSASSI TFASQPSSSS LSFAIPIKQD PSDYWSILGY QNSATSFGNA  420
KNPSVEPHLI PSTTNVSAYH NTTTLPFNMD YCASSNSASE SNNGYFNVGY NVHQQNNGTS  480
HIPFATPIAL SGSNSYNEGS SGYGSSWIGP ALHTFQTHAK PNLFQTPIFG ME

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57390.1	1e-143	AP2 family protein