PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023913790.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family ARR-B
Protein Properties Length: 586aa    MW: 65979 Da    PI: 7.1338
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023913790.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like49.49.8e-16201252154
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                     kp l+W++eLH+rF +a + L G++ + Pk+i ++m+ +gL +e++ SHLQ+Y 
  XP_023913790.1 201 KPNLVWNNELHNRFPQAFNVL-GID-THPKKIIQHMNAPGLKRENISSHLQRYH 252
                     6899*****************.888.79*************************7 PP
2Myb_DNA-binding22.42.9e-07205251347
                      SS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT.TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg.tWktIartmg.kgRtlkqcksrwqky 47 
                       W  e++ ++ +a++ lG + ++k+I ++m+  g+ ++++ s++q y
   XP_023913790.1 205 VWNNELHNRFPQAFNVLGIDtHPKKIIQHMNaPGLKRENISSHLQRY 251
                      7********************************************98 PP
3Response_reg571.1e-19241301108
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH.ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd.pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 
                     +l+vd + + + ++ ++l + gy +v +a++g++al++++ekd  +l+l+   +p+md +e+l+++re + klp+i+++a ++e+ +l  l  Ga
  XP_023913790.1  24 ILVVDGDSTCLTIISKMLYRFGY-KVVTAKQGSDALAIAREKDdLQLVLTEAHLPDMDKYEFLERMREMS-KLPVIIMSADDSEKAMLGSLFKGA 116
                     89*********************.***************98888************************99.************************ PP

                     SEEEESS--HHHHH CS
    Response_reg  95 kdflsKpfdpeelv 108
                       +l+Kp+  +++ 
  XP_023913790.1 117 VLHLVKPITLNDMK 130
                     ********999886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    
MNREKSISVE PIRNSSSLPR DVSILVVDGD STCLTIISKM LYRFGYKVVT AKQGSDALAI  60
AREKDDLQLV LTEAHLPDMD KYEFLERMRE MSKLPVIIMS ADDSEKAMLG SLFKGAVLHL  120
VKPITLNDMK NLWQFALMKK SDKTLAAARI SSGQWALSEE SVNQPFENKK EESHQKAKRK  180
APEETNKDEE EENYDSSVLK KPNLVWNNEL HNRFPQAFNV LGIDTHPKKI IQHMNAPGLK  240
RENISSHLQR YHLPLKCQQD AIQKTMIGES TGSSLGPYYP SSSVSLHGLH QFSNQQSVST  300
SYQPEFGNDL RRNLSSHMYT PFLGSAHFPN YVNSSLGSHY PSPAFNLHGL LQFPNQYAAS  360
TSYQPEFGND LRRNLSSHMY MPFLGSAHFP NYVDSGLGSY YPSSAFNLHG LQFSNQQSAS  420
TSYQPVLGNG LQRNLSGHIY MPFVGSAHVP NYIDSSCSNP SNPMYGQLTP PVSQLGYTFP  480
NSSHVGSWII SNELAGFVQI GNSSGEETVS RNTDPFGVHN IGFLSDNTQQ EHLQQQQQFL  540
QQQQPFLQQQ QPFLQQQPFL RQQQQPFLQQ PYQPLPPPPQ PPQEPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.13e-47ARR-B family protein