PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023914042.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 435aa    MW: 48986.6 Da    PI: 6.3228
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023914042.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS245.62e-75463603288
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     +l+ ec+++v+++++ +a+ +L+++s la  +g+++qR+aayf eA+a+r+++ + ++ly+a+++++ s   +see  a+klf+ v+P++k+++l
  XP_023914042.1  46 RLIKECVNHVAASNMPNANIMLEQISRLAYANGSSIQRIAAYFIEAIAERMLKtKLPSLYNAFNSTKIS--LVSEENVAQKLFYIVCPFIKVTYL 138
                     67889************************************************999******9999997..699999****************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                     ++NqaI ea+ege  vHiiD+   ++ QW+ Ll+++ +Rpeg+p l+iTg+++    ++  le+++ rL   A++l++pf+f + ++++le++++
  XP_023914042.1 139 ITNQAIIEALEGEMWVHIIDLYSFEPEQWIDLLHTFKARPEGSPCLKITGIHD----QRVVLEQMAIRLMAEASKLEIPFHFIP-IVSKLENVDT 228
                     *****************************************************....9**************************.7999****** PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrll.......................................desvsleserdevLklvkslsPkvvvvveqead 247
                     e++ v+ gEa+a++ v+qlh+ll                                       + s +     +++L+++++ls kv+v++e ea+
  XP_023914042.1 229 ESFCVNAGEAIAISTVFQLHSLLafdeevprrispvaskrplrkfldevspdftspssilspNFSPK----MKNFLSFLWRLSRKVMVIAELEAN 319
                     *****************************************************99887654444444....566********************* PP

            GRAS 248 hnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                     hn+ s+ er+ eal++y+ lfd+l++  + +  er+++Er+
  XP_023914042.1 320 HNGFSLTERVKEALDFYAPLFDCLDSIRSITPTERQMIERM 360
                     **************************999999*******98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    
MAGAQDARYS ATPSFSQWMS LSPGLGSPYT MIGTPLSEEW CMELLRLIKE CVNHVAASNM  60
PNANIMLEQI SRLAYANGSS IQRIAAYFIE AIAERMLKTK LPSLYNAFNS TKISLVSEEN  120
VAQKLFYIVC PFIKVTYLIT NQAIIEALEG EMWVHIIDLY SFEPEQWIDL LHTFKARPEG  180
SPCLKITGIH DQRVVLEQMA IRLMAEASKL EIPFHFIPIV SKLENVDTES FCVNAGEAIA  240
ISTVFQLHSL LAFDEEVPRR ISPVASKRPL RKFLDEVSPD FTSPSSILSP NFSPKMKNFL  300
SFLWRLSRKV MVIAELEANH NGFSLTERVK EALDFYAPLF DCLDSIRSIT PTERQMIERM  360
DMLFSAGTGA PYFPFQLGSS GDKNEITSNV ASVCRRSLRL KSNTMEVKRC ADTLEIKHYG  420
SKKAVFGCWE NLGAE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-89GRAS family protein