PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023914068.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family GRAS
Protein Properties Length: 470aa    MW: 52671.6 Da    PI: 5.8984
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023914068.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4171.7e-127484661374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL ecA  v +g++e+a+  L+++s+laspdgd+mqR+aayfteALa r+++ +++l kal++++ s  ++see+ ++klf+e  P+lk+++
  XP_023914068.1  48 LIHLLQECAVNVGTGSMENANLGLEHISHLASPDGDTMQRIAAYFTEALADRMLKGWPGLHKALNSTKLS--SVSEEVLIQKLFFEFLPFLKVAY 140
                     689*************************************************************999998..599******************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     l++NqaI ea+ege+ vHiiD+   +++QW++Llq +++Rpegpp+l+iTg+++    +k  le+++ +L + A++l++pf+fn+ ++ +le+l+
  XP_023914068.1 141 LITNQAIIEAIEGEKVVHIIDLYSIEPAQWINLLQMISARPEGPPHLKITGIHE----QKVVLEQMALQLVEEADRLDIPFQFNP-IVCKLENLD 230
                     ******************************************************....9**************************.5788***** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll....................................................desvsleserdevLklvks 233
                     le+L vk+gEalaV+++l+lh+ll                                                      s++ + + +++L+ ++s
  XP_023914068.1 231 LESLGVKTGEALAVSSILKLHSLLatdddmlrrdspvalknlqkvfhnhqrplrefldkdlinlylaspdstspssPLSLCASPKMESFLSSLWS 325
                     ***********************************************************************99966333333336788******* PP

            GRAS 234 lsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvp 328
                     lsPk++v++eqeadhn+ +++er+ +al++y+alfd+l+++++r++ er+k+E++l+g+ei+n++acegaer+erhe+lekW +rle aGF+ vp
  XP_023914068.1 326 LSPKLMVITEQEADHNGFTLMERVKKALNFYAALFDCLDSTVSRAAIERHKIEKMLFGEEIKNIIACEGAERKERHEKLEKWISRLELAGFGRVP 420
                     *********************************************************************************************** PP

            GRAS 329 lsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +s++   qa +ll+  +  gy+ +ee+g+lv++Wk+ pL+svSaWr
  XP_023914068.1 421 FSYYGRLQAGRLLQISNYGGYNFKEENGCLVICWKSIPLFSVSAWR 466
                     *****************9***************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    
MAGAVQEDGS SVTSSSHESS PWMQLSPGLG SPSPWIRELG SEERGLCLIH LLQECAVNVG  60
TGSMENANLG LEHISHLASP DGDTMQRIAA YFTEALADRM LKGWPGLHKA LNSTKLSSVS  120
EEVLIQKLFF EFLPFLKVAY LITNQAIIEA IEGEKVVHII DLYSIEPAQW INLLQMISAR  180
PEGPPHLKIT GIHEQKVVLE QMALQLVEEA DRLDIPFQFN PIVCKLENLD LESLGVKTGE  240
ALAVSSILKL HSLLATDDDM LRRDSPVALK NLQKVFHNHQ RPLREFLDKD LINLYLASPD  300
STSPSSPLSL CASPKMESFL SSLWSLSPKL MVITEQEADH NGFTLMERVK KALNFYAALF  360
DCLDSTVSRA AIERHKIEKM LFGEEIKNII ACEGAERKER HEKLEKWISR LELAGFGRVP  420
FSYYGRLQAG RLLQISNYGG YNFKEENGCL VICWKSIPLF SVSAWRRWSN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0GRAS family protein