PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023914406.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 512aa MW: 58504.3 Da PI: 7.9342

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023914406.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.3	2.1e-11	336	380	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + Er+RR+++N++f+ Lr+ lP+ +K +Ka+ L + eY++sL XP_023914406.1 336 HMISERKRREKLNESFQALRSFLPPG-----TKKDKASLLATTREYLSSL 380 8899******************97.....8**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence
MDKAFLFDES SRANFFQLIM QSIPYTYICL WSNWPQPSSC LRYLDGFFYE ENNQPSSSSG 60 TPARMLFEEY RQSVFMVENE CVPGLAFKNS RPYLELQEVH LQRFASKEVQ RQFYQVAGIK 120 TAIFMGCKSG EIEIGFSNVP AEIDIEKELR SWFAEDFSRQ FSPLRLPDQN PPSSSSSLSM 180 DSPEYSSLLF NIPNTTHLPE TLREVVNPTL QQIPTPSPHQ AAMQAYARLQ NIQLPNPETE 240 AAAITRAIFN VLTSPSSSSS SQQPHTNLPY SHQVVSKFSA FKRYASHLGP RTTQVRANLG 300 RQSMMKRSFA FFKSLNYLRV SARIQANRPT TTQLHHMISE RKRREKLNES FQALRSFLPP 360 GTKKDKASLL ATTREYLSSL KAQVEELNRK NQLLEAHRLP AKEAKEEETS SSNERLIVRT 420 SQVSESTSSE ERIVDLQVII RGECPMVDIL IRILEFLKQV ENVSLQSMET NTRIIESSSL 480 NHIILRLRIE GPEWDESAFQ EAVRRVVADL AP

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence

MDKAFLFDES SRANFFQLIM QSIPYTYICL WSNWPQPSSC LRYLDGFFYE ENNQPSSSSG  60
TPARMLFEEY RQSVFMVENE CVPGLAFKNS RPYLELQEVH LQRFASKEVQ RQFYQVAGIK  120
TAIFMGCKSG EIEIGFSNVP AEIDIEKELR SWFAEDFSRQ FSPLRLPDQN PPSSSSSLSM  180
DSPEYSSLLF NIPNTTHLPE TLREVVNPTL QQIPTPSPHQ AAMQAYARLQ NIQLPNPETE  240
AAAITRAIFN VLTSPSSSSS SQQPHTNLPY SHQVVSKFSA FKRYASHLGP RTTQVRANLG  300
RQSMMKRSFA FFKSLNYLRV SARIQANRPT TTQLHHMISE RKRREKLNES FQALRSFLPP  360
GTKKDKASLL ATTREYLSSL KAQVEELNRK NQLLEAHRLP AKEAKEEETS SSNERLIVRT  420
SQVSESTSSE ERIVDLQVII RGECPMVDIL IRILEFLKQV ENVSLQSMET NTRIIESSSL  480
NHIILRLRIE GPEWDESAFQ EAVRRVVADL AP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	340	345	ERKRRE
2	341	346	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	9e-71	bHLH family protein