PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023914824.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

NF-YC

Protein Properties

Length: 252aa MW: 28324.8 Da PI: 6.2276

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023914824.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	179	4.4e-56	74	177	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdfl XP_023914824.1 74 QLQNFWTNQyqeIEQTSDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFL 168 89****99999****************************************************************************** PP NF-YC 93 vdivprdel 101 vdivpr++l XP_023914824.1 169 VDIVPREDL 177 ****987 PP

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence
MDQLGHGQPA GQVPYGLNPY QSNQMIGASQ PGSVGTMQSP SQTAGLSASS AQLAQHQLAY 60 QHIHHQQQQQ LQQQLQNFWT NQYQEIEQTS DFKNHSLPLA RIKKIMKADE DVRMISAEAP 120 VIFARACEMF ILELTLRSWN HTEENKRRTL QKNDIAAAIT RTDIFDFLVD IVPREDLKDE 180 VLASIPRAGN LPVGGDALPY YYMQPQHSSQ VGAPGMIMGK PVMDQVYGQQ TRPYMTQSAW 240 PHLQQEQPPS DS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	147	153	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08970.3	8e-83	NF-YC family protein