PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023914834.1
Organism
Quercus suber
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 25632.4 Da    PI: 6.3115
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023914834.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.19.5e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+i+n + rqvtfskRr g++KKAeELSvLCdaeva+iifs tgkl+e+ss
  XP_023914834.1  9 KKIDNVTARQVTFSKRRRGLIKKAEELSVLCDAEVALIIFSATGKLFEFSS 59
                    68***********************************************96 PP
2K-box46.21.9e-16871711599
           K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     +  + ++ +L ke+    +++R++ GedL+ L+l +L +Le+ Le +l+++ + K+e ++++i++l kk  +l eenk+L++k++
  XP_023914834.1  87 QLENGNHVRLSKEVADKTNQLRQMRGEDLQGLNLDDLLKLEKVLEAGLTRVLESKEEKIMNEISTLEKKGSQLMEENKQLKQKMM 171
                     5555667789999999999***************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MAREKIKIKK IDNVTARQVT FSKRRRGLIK KAEELSVLCD AEVALIIFSA TGKLFEFSSS  60
SMKEILERYH LHSNSLEKMD QPSLELQLEN GNHVRLSKEV ADKTNQLRQM RGEDLQGLNL  120
DDLLKLEKVL EAGLTRVLES KEEKIMNEIS TLEKKGSQLM EENKQLKQKM MMLSKGKRSG  180
LVDSDIMIQE EGMSSDQSVT NVYSCNSGPP PEDDSSDTSL RLGLSLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-80MIKC_MADS family protein