PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023914935.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MIKC_MADS

Protein Properties

Length: 225aa MW: 25901.5 Da PI: 9.7769

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023914935.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.8	6e-28	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+EL +LCdaev v+ifsstgklye+ss XP_023914935.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYEFSS 59 8***********************************************96 PP
2	K-box	95.1	1.1e-31	80	169	9	98
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + +++ + +q+e+a L+++++nLq+++R+++Ge+L+ +s+k+Lq+Le+qLe sl+ +R kK+++l+++ieel +k +++++en++L kk+ XP_023914935.1 80 NPTSEVKFWQREAAMLRQQLQNLQENHRQMMGEELSGMSVKDLQNLENQLEMSLRGVRMKKDQILMDEIEELNRKGNQIHQENMELYKKV 169 678899********************************************************************************9996 PP

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVMIFSS TGKLYEFSST 60 SMKSVIERYN KTKEEHQPGN PTSEVKFWQR EAAMLRQQLQ NLQENHRQMM GEELSGMSVK 120 DLQNLENQLE MSLRGVRMKK DQILMDEIEE LNRKGNQIHQ ENMELYKKVY GTRDANGANR 180 TSLLLDGLGI GEDPHEPVHL QLSQPQQQNY ETPTRATKLG RLQLQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.1	1e-104	MIKC_MADS family protein