PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023915988.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

MYB

Protein Properties

Length: 373aa MW: 41452.1 Da PI: 6.1654

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023915988.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.6	1.1e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT+eEd +++ +v +G g+W++++++ g++R++k+c++rw +yl XP_023915988.1 14 RGLWTAEEDAKILAYVSNYGIGNWTLVPKKAGLNRCGKSCRLRWTNYL 61 788*******************************************97 PP
2	Myb_DNA-binding	49.2	1.2e-15	70	110	4	46
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +T++E+el+++++k G++ W++Ia+ ++ gRt++++k++w++ XP_023915988.1 70 FTPQEEELIINLHKAIGSR-WSLIAKQLP-GRTDNDVKNYWNT 110 9****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MGRPPCCDKS NVKRGLWTAE EDAKILAYVS NYGIGNWTLV PKKAGLNRCG KSCRLRWTNY 60 LRADLKHDGF TPQEEELIIN LHKAIGSRWS LIAKQLPGRT DNDVKNYWNT KLRKKLSKMG 120 IDPVTHKPYS QILSDYGNIS GILNTGNQIG PLNKNLNYAS TPKPEPSSVL TSFPSTNMIN 180 MPMEFQNSPS NENIVPLLDF MSHQFQQVNI NQETIQPHFF NEATSSCSSS SSSNVTQLSP 240 LPQSYSCQPS QVQNAPSSSF NWSEFLITDP LPFPGFQQQQ DRHFPGFSSS TNPSTFAQTP 300 PLNFASGNEY GLNQVGQEEG IGKFDVGSTI GGHTNNNRLE ASSSVSSFVN SILDKDSEMQ 360 AEFPDILDES FDY

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MGRPPCCDKS NVKRGLWTAE EDAKILAYVS NYGIGNWTLV PKKAGLNRCG KSCRLRWTNY  60
LRADLKHDGF TPQEEELIIN LHKAIGSRWS LIAKQLPGRT DNDVKNYWNT KLRKKLSKMG  120
IDPVTHKPYS QILSDYGNIS GILNTGNQIG PLNKNLNYAS TPKPEPSSVL TSFPSTNMIN  180
MPMEFQNSPS NENIVPLLDF MSHQFQQVNI NQETIQPHFF NEATSSCSSS SSSNVTQLSP  240
LPQSYSCQPS QVQNAPSSSF NWSEFLITDP LPFPGFQQQQ DRHFPGFSSS TNPSTFAQTP  300
PLNFASGNEY GLNQVGQEEG IGKFDVGSTI GGHTNNNRLE ASSSVSSFVN SILDKDSEMQ  360
AEFPDILDES FDY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28470.1	2e-90	MYB family protein