PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023916582.1

Organism

Quercus suber

Taxonomic ID

58331

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Quercus

Family

bHLH

Protein Properties

Length: 522aa MW: 57489.3 Da PI: 4.8783

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023916582.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.3	4.1e-16	314	360	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq XP_023916582.1 314 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 360 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence
MINHHCVPDF ELDEDYSFPT SSSAASRSRK SPLPEEEIME LLWQNGQVVM QSQNQRSIRR 60 SPPSKLEQEN DNNHLFMQEE EMAAWLHYPL DEDNFCSQLE LLDDDNNNNM NMSSQSQSQT 120 TTYTNINPMV RSSQPQPQPP PPPSRPPIPP SRRSELAESK VSQFPSRQKG HYCDEETNKT 180 MAAAVVRESS TMVDSNETPE TWAVVDKGCA TMSGGGAEVA VTSSGGRGGG GGSKVEMMTC 240 EMTVTSSPGC SSASAEAGQK EEAAAEDRKR KSMEAEDDDA DAECHSEDVE FESADAKKQV 300 RGSTSTKRSR AAEVHNLSER RRRDRINEKM KALQELIPRC NKSDKASMLD EAIEYLKSLQ 360 LQVQMMSMGC GMVPMIFPGV QQYMPTMGMG IGMGMGMGMG MEMGINRPMF PLSNMLAASG 420 LPTGAAAHLG PRFPMPAFMP PVPVPNPYRI QSNQSEQMLN SLGAQHPSQS WFPNFTDPYK 480 QYVAPHQMQL PLPQNQAMAQ PSTSKPSTSR GPENLNNNQS GT

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence

MINHHCVPDF ELDEDYSFPT SSSAASRSRK SPLPEEEIME LLWQNGQVVM QSQNQRSIRR  60
SPPSKLEQEN DNNHLFMQEE EMAAWLHYPL DEDNFCSQLE LLDDDNNNNM NMSSQSQSQT  120
TTYTNINPMV RSSQPQPQPP PPPSRPPIPP SRRSELAESK VSQFPSRQKG HYCDEETNKT  180
MAAAVVRESS TMVDSNETPE TWAVVDKGCA TMSGGGAEVA VTSSGGRGGG GGSKVEMMTC  240
EMTVTSSPGC SSASAEAGQK EEAAAEDRKR KSMEAEDDDA DAECHSEDVE FESADAKKQV  300
RGSTSTKRSR AAEVHNLSER RRRDRINEKM KALQELIPRC NKSDKASMLD EAIEYLKSLQ  360
LQVQMMSMGC GMVPMIFPGV QQYMPTMGMG IGMGMGMGMG MEMGINRPMF PLSNMLAASG  420
LPTGAAAHLG PRFPMPAFMP PVPVPNPYRI QSNQSEQMLN SLGAQHPSQS WFPNFTDPYK  480
QYVAPHQMQL PLPQNQAMAQ PSTSKPSTSR GPENLNNNQS GT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	225	232	GGRGGGGG
2	319	324	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.1	4e-44	bHLH family protein